Literature DB >> 25506668

Conformation dynamics and polarization effect of α,α-trehalose in a vacuum and in aqueous and salt solutions.

Zigui Kan1, Xiufen Yan, Jing Ma.   

Abstract

Conformational changes of α,α-trehalose in a vacuum, water, and 0-20 wt % NaCl solutions were investigated by means of molecular dynamics (MD) simulations at different levels of density function theory (DFT) and with fixed-charge nonpolarizable and variable-charge force fields (FFs), respectively. The relative thermodynamic stability of trehalose is enhanced by the formation of intercycle and/or intracycle hydrogen bonds, but some thermodynamically unfavorable structures can be sampled in the DFT-based ab initio MD simulation. The polarization effects of polar trehalose molecule in aqueous and NaCl solutions were studied by a series of MD simulations with both the conventional nonpolarizable and polarizable force field models. In the polarizable model, the partial charges of trehalose were updated every 2 ps using DFT calculations and fused with the other FF parameters for the energy calculation and MD simulation. Around the trehalose, water molecules located in an asymmetry model and trehalose have a stronger tendency to bind with water molecules than Na(+) and Cl(-) ions. When the trehalose concentration is increased from 3.26 to 6.31 wt % in salt aqueous solution, the two trehalose molecules periodically approach each other in a nearly anhydrate state and leave a way to keep the favorable hydration structure with the mean trehalose-trehalose distance of 8.6 Å. The similarity between the solvated dimer packing styles (shoulder-by-shoulder or head-to-head) and crystal stacking can be used to make an extrapolation to higher sugar concentrations and to rationalize the bioprotection function of trehalose in high salt concentration.

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Year:  2014        PMID: 25506668     DOI: 10.1021/jp507692h

Source DB:  PubMed          Journal:  J Phys Chem A        ISSN: 1089-5639            Impact factor:   2.781


  2 in total

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Authors:  Chung-Chih Lin; Chao-Long Yang
Journal:  Polymers (Basel)       Date:  2022-05-27       Impact factor: 4.967

2.  Use of Raman and Raman optical activity to extract atomistic details of saccharides in aqueous solution.

Authors:  Vladimír Palivec; Christian Johannessen; Jakub Kaminský; Hector Martinez-Seara
Journal:  PLoS Comput Biol       Date:  2022-01-20       Impact factor: 4.475

  2 in total

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