| Literature DB >> 25502877 |
Abrar Ahmad1, Shlear Askari1, Rahel Befekadu2, Victoria Hahn-Strömberg1.
Abstract
There have been numerous studies on the gene expression of connective tissue growth factor (CTGF) in colorectal cancer, however very few have investigated polymorphisms in this gene. The present study aimed to determine whether single nucleotide polymorphisms (SNPs) in the CTGF gene are associated with a higher susceptibility to colon cancer and/or an invasive tumor growth pattern. The CTGF gene was genotyped for seven SNPs (rs6918698, rs1931002, rs9493150, rs12526196, rs12527705, rs9399005 and rs12527379) by pyrosequencing. Formalin‑fixed paraffin‑embedded tissue samples (n=112) from patients diagnosed with colon carcinoma, and an equal number of blood samples from healthy controls, were selected for genomic DNA extraction. The complexity index was measured using images of tumor samples (n=64) stained for cytokeratin‑8. The images were analyzed and correlated with the identified CTGF SNPs and clinicopathological parameters of the patients, including age, gender, tumor penetration, lymph node metastasis, systemic metastasis, differentiation and localization of tumor. It was demonstrated that the frequency of the SNP rs6918698 GG genotype was significantly associated (P=0.05) with an increased risk of colon cancer, as compared with the GC and CC genotypes. The other six SNPs (rs1931002, rs9493150, rs12526196, rs12527705, rs9399005 and rs12527379) exhibited no significant difference in the genotype and allele frequencies between patients diagnosed with colon carcinoma and the normal healthy population. A trend was observed between genotype variation at rs6918698 and the complexity index (P=0.052). The complexity index and genotypes for any of the studied SNPs were not significantly correlated with clinical or pathological parameters of the patients. These results indicate that the rs6918698 GG genotype is associated with an increased risk of developing colon carcinoma, and genetic variations at the rs6918698 are associated with the growth pattern of the tumor. The present results may facilitate the identification of potential biomarkers of the disease in addition to drug targets.Entities:
Mesh:
Substances:
Year: 2014 PMID: 25502877 PMCID: PMC4337474 DOI: 10.3892/mmr.2014.3083
Source DB: PubMed Journal: Mol Med Rep ISSN: 1791-2997 Impact factor: 2.952
Forward, reverse and sequencing primers used to analyze seven single nucleotide polymorphisms in connective tissue growth factor.
| SNP number | Primers | Annealing temperature (°C) | Amplicon length (bp) |
|---|---|---|---|
| rs6918698 | F: GGGGCAGATTTCCAAAACTCTT | 54 | 112 |
| rs1931002 | F: CCCATAGGCATGGTTATTTAAAGA | 54 | 116 |
| rs9493150 | F: TCAGAGCATGGGTTCAAGATAA | 53 | 111 |
| rs12526196 | F: AGAGGAAAATCGTTCACCATTTTA | 52 | 113 |
| rs12527705 | F: CAATGGTGCTCCTCATTTCTT | 52 | 94 |
| rs9399005 | F: TGATGTGAAGGGTTGGAAACTAA | 54 | 93 |
| rs12527379 | F: AGCTTTCTCCCTCTCTCCTTTAA | 54 | 111 |
Biotinylated primer; F, forward; R, reverse; S, sequencing primer; SNP, single nucleotide polymorphis; bp, base pairs.
Genotypes in connective tissue growth factor and their association as risk factors for colorectal cancer.
| CTGF SNPs | Genotype | Total CRC and control samples (% all samples) | Control (% controls) | CRC (% CRC) | P-value | OR | 95% CI |
|---|---|---|---|---|---|---|---|
| rs6918698 | CC | 64 (28.6) | 35 (31.2) | 29 (25.9) | 0 | 1.00 | (Referent) |
| GC | 115 (51.3) | 61 (54.5) | 54 (48.2) | 0.833 | 1.068 | 0.579–1.973 | |
| GG | 45 (20.1) | 16 (14.3) | 29 (25.9) | 0.050 | 2.187 | 0.999–4.79 | |
| rs1931002 | GG | 198 (88.4) | 98 (87.5) | 100 (89.3) | 0 | 1.00 | (Referent) |
| GA | 23 (10.3) | 13 (11.6) | 10 (8.9) | 0.524 | 0.75 | 0.316–1.8 | |
| AA | 3 (1.3) | 1 (0.9) | 2 (1.8) | 0.585 | 1.96 | 0.175–21.966 | |
| rs9493150 | CC | 129 (57.6) | 67 (59.8) | 62 (55.4) | 0 | 1.00 | (Referent) |
| GC | 81 (36.2) | 40 (35.7) | 41 (36.6) | 0.718 | 1.108 | 0.635–1.93 | |
| GG | 14 (6.2) | 5 (4.5) | 9 (8) | 0.255 | 1.945 | 0.618–6.122 | |
| rs12526196 | TT | 183 (81.7) | 94 (83.9) | 89 (79.5) | 0 | 1.00 | (Referent) |
| TC | 34 (15.2) | 18 (16.1) | 16 (14.3) | 0.866 | 0.939 | 0.451–1.954 | |
| CC | 7 (3.1) | 0 (0) | 7 (6.2) | 0.999 | N/A | N/A | |
| rs12527705 | TT | 162 (72.3) | 78 (69.6) | 84 (75.0) | 0 | 1.00 | (Referent) |
| AT | 57 (25.4) | 34 (30.3) | 23 (20.5) | 0.137 | 0.628 | 0.341–1.159 | |
| AA | 5 (2.2) | 0 (0) | 5 (4.4) | 0.9999 | N/A | N/A | |
| rs9399005 | GG | 63 (47) | 34 (50.7) | 29 (43.3) | 0 | 1.00 | (Referent) |
| GA | 61 (45.5) | 29 (43.3) | 32 (47.8) | 0.474 | 1.294 | 0.639–2.62 | |
| AA | 10 (7.5) | 4 (6) | 6 (9) | 0.415 | 1.759 | 0.452–6.843 | |
| rs12527379 | GG | 41 (30.6) | 17 (25.4) | 24 (35.8) | 0 | 1.00 | (Referent) |
| GA | 65 (48.5) | 37 (55.2) | 28 (41.8) | 0.123 | 0.536 | 0.243–1.183 | |
| AA | 28 (20.9) | 13 (19.4) | 15 (22.4) | 0.683 | 0.817 | 0.31–2.152 |
CTGF, connective tissue growth factor; CRC, colorectal cancer; OR, odds ratio; CI, confidence interval; N/A, not applicable; SNP, single nucleotide polymorphism.
Figure 1Illustration of rs6918698 single nucleotide polymorphism pyrograms in connective tissue growth factor. (A) Wild type CC genotype. The polymorphism is at the same codon (arrow), in (B) one C is replaced with G and in (C) CC is replaced by GG.
Association between different single nucleotide polymorphisms in connective tissue growth factor and patient survival.
| CTGF SNPs | Genotype | Survival P-value Kaplan-Meier’s test | P-value Cox-regression test | OR | 95% CI |
|---|---|---|---|---|---|
| rs6918698 | CC | 0.668 | 1.00 | Referent | |
| GC | 0.374 | 0.752 | 1.402–1.410 | ||
| GG | 0.612 | 0.83 | 0.405–1.702 | ||
| rs1931002 | GG | 0.367 | 1.00 | Referent | |
| GA | 0.174 | 0.445 | 0.139–1.428 | ||
| AA | 0.911 | 1.119 | 0.155–8.104 | ||
| rs9493150 | CC | 0.409 | 1.00 | Referent | |
| GC | 0.187 | 1.455 | 0.834–2.538 | ||
| GG | 0.709 | 1.199 | 0.462–3.115 | ||
| rs12526196 | TT | 0.868 | 1.00 | Referent | |
| TC | 0.62 | 0.817 | 0.368–1.815 | ||
| CC | 0.901 | 1.067 | 0.383–2.971 | ||
| rs12527705 | TT | 0.489 | 1.00 | Referent | |
| AT | 0.876 | 0.938 | 0.421–2.089 | ||
| AA | 0.266 | 1.98 | 0.594–6.608 | ||
| rs9399005 | GG | 0.123 | 1.00 | Referent | |
| GA | 0.48 | 0.772 | 0.377–1.583 | ||
| AA | 0.132 | 2.182 | 0.791–6.021 | ||
| rs12527379 | GG | 0.599 | |||
| GA | 0.321 | 0.682 | 0.320–1.452 | ||
| AA | 0.592 | 0.768 | 0.330–1.881 |
SNP, single nucleotide polymorphism; CTGF, connective tissue growth factor; OR, odds ratio; CI, confidence interval.
Figure 2Survival curve presenting the different genotypes associated with rs6918698. There was no significant association between any genotype with survival.
Clinicopathological data of the patients diagnosed with colorectal cancer.
| Parameter studied | N (% of total) |
|---|---|
| Age | |
| ≤60 years | 7 (6.2) |
| >60 years | 105 (93.7) |
| Gender | |
| Male | 67 (60) |
| Female | 45 (40) |
| Tumor penetration | |
| T1 | 4 (3.5) |
| T2 | 18 (16) |
| T3 | 76 (68) |
| T4 | 14 (12.5) |
| Lymph node metastasis | |
| N0 | 62 (55.3) |
| N1 | 32 (28.5) |
| N2 | 17 (15.1) |
| Metastasis | |
| M1 | 8 (7.1) |
| Mx | 104 (92.8) |
| Differentiation | |
| Low | 19 (16.9) |
| Medium | 71 (63.4) |
| High | 18 (16) |
| Localization | |
| Right colon | 73 (65.1) |
| Left colon | 39 (34.8) |
| Survival | |
| Survived | 57 (50.8) |
| Died | 55 (49.1) |
CRC, colorectal cancer; N, number of samples.
Frequencies of polymorphisms in connective tissue growth factor from the sampled patients compared with HapMap data for the central European population.
| Tumor | Normal | HapMap | ||||
|---|---|---|---|---|---|---|
|
|
|
| ||||
| Genotype | Frequency | Number | Frequency | Number | Frequency | Number |
| SNP rs6918698 | ||||||
| CC | 0.26 | 29 | 0.31 | 35 | 0.21 | 13 |
| GC | 0.48 | 54 | 0.54 | 61 | 0.44 | 27 |
| GG | 0.26 | 29 | 0.14 | 16 | 0.35 | 22 |
| rs1931002 | ||||||
| GG | 0.89 | 100 | 0.87 | 98 | 0.72 | 47 |
| GA | 0.09 | 10 | 0.12 | 13 | 0.23 | 15 |
| AA | 0.018 | 2 | 0.01 | 1 | 0.05 | 3 |
| rs9493150 | ||||||
| CC | 0.55 | 62 | 0.6 | 67 | 0.5 | 56 |
| GC | 0.37 | 41 | 0.36 | 40 | 0.4 | 45 |
| GG | 0.08 | 9 | 0.04 | 5 | 0.1 | 12 |
| rs12526196 | ||||||
| TT | 0.80 | 89 | 0.84 | 94 | 0.89 | 100 |
| TC | 0.14 | 16 | 0.16 | 18 | 0.09 | 10 |
| CC | 0.06 | 7 | 0 | 0 | 0.02 | 2 |
| rs12527705 | ||||||
| TT | 0.75 | 84 | 0.70 | 78 | N/A | N/A |
| AT | 0.21 | 23 | 0.30 | 34 | N/A | N/A |
| AA | 0.04 | 5 | 0 | 0 | N/A | N/A |
| rs9399005 | ||||||
| GG | 0.43 | 29 | 0.51 | 34 | 0.56 | 63 |
| GA | 0.48 | 32 | 0.43 | 29 | 0.34 | 38 |
| AA | 0.09 | 6 | 0.06 | 4 | 0.106 | 12 |
| rs12527379 | ||||||
| GG | 0.36 | 24 | 0.25 | 17 | 0.33 | 37 |
| GA | 0.42 | 28 | 0.55 | 37 | 0.56 | 63 |
| AA | 0.22 | 15 | 0.19 | 13 | 0.11 | 13 |
N/A, not applicable; HapMap, International HapMap Project data.
Figure 3Human colon biopsies exhibiting tumor growth patterns in colon carcinoma. (A) Expansive tumor growth with smooth invasive front (CI=1). (B) The infiltrative growth pattern with highly coarse invasive front and dispersed tumor cells (CI=5). CI, complexity index.
Association of complexity index with clinicopathological parameters of colorectal cancer and single nucleotide polymorphisms in connective tissue growth factor.
| Parameters | Low CI (% of total) | Medium CI (% of total) | High CI (% of total) | P-value |
|---|---|---|---|---|
| Gender | ||||
| Male | 8 (12.5) | 22 (34.49) | 10 (15.6) | 0.885 |
| Female | 6 (9.4) | 13 (20.3) | 5 (7.8) | |
| Age | ||||
| <60 years | 0 (0) | 4 (6.2) | 0 (0) | 0.321 |
| >60 years | 14 (21.9) | 31 (84.4) | 15 (23.4) | |
| Tumor stage (T) | ||||
| T1 | 1 (1.6) | 2 (3.1) | 0 (0) | 0.737 |
| T2 | 4 (6.2) | 4 (6.2) | 2 (3.1) | |
| T3 | 8 (12.5) | 25 (39.1) | 12 (18.8) | |
| T4 | 1 (1.6) | 4 (6.2) | 1 (1.6) | |
| Lymph node metastasis (N) | ||||
| N0 | 8 (12.5) | 20 (31.7) | 8 (12.5) | 0.949 |
| N1 | 3 (4.8) | 9 (14.3) | 3 (4.8) | |
| N2 | 2 (3.1) | 6 (9.5) | 4 (6.2) | |
| Metastasis (M) | ||||
| Mx | 13 (20.3) | 32 (50.0) | 14 (21.9) | 1 |
| M1 | 1 (1.6) | 3 (4.7) | 1 (1.6) | |
| Localization | ||||
| Right colon | 9 (14.1) | 24 (37.5) | 13 (20.3) | 0.345 |
| Left colon | 5 (7.8) | 11 (17.2) | 2 (3.1) | |
| Differentiation | ||||
| Low | 3 (4.8) | 3 (4.8) | 4 (6.3) | 0.280 |
| Medium | 7 (11.1) | 26 (41.3) | 8 (12.5) | |
| High | 4 (6.3) | 6 (9.5) | 2 (3.1) | |
| rs6918698 | ||||
| CC | 3 (4.7) | 11 (17.2) | 3 (4.7) | 0.052 |
| GC | 3 (4.7) | 17 (26.6) | 10 (15.6) | |
| GG | 8 (12.5) | 7 (10.9) | 2 (3.1) | |
| rs1931002 | ||||
| GG | 14 (21.9) | 35 (54.7) | 14 (21.9) | 0.453 |
| GA | 0 (0) | 0 (0) | 1 (1.6) | |
| rs9493150 | ||||
| CC | 11 (17.2) | 19 (29.7) | 9 (14.1) | 0.370 |
| GC | 2 (3.1) | 13 (20.3) | 6 (9.4) | |
| GG | 1 (1.6) | 3 (4.7) | 0 (0) | |
| rs12526196 | ||||
| TT | 13 (20.3) | 27 (42.2) | 13 (20.3) | 0.285 |
| TC | 1 (1.6) | 6 (9.4) | 0 (0) | |
| CC | 0 (0) | 2 (3.1) | 2 (3.1) | |
| rs12527705 | ||||
| TT | 9 (14.1) | 25 (39.1) | 11 (17.2) | 0.889 |
| AT | 4 (6.2) | 9 (14.1) | 3 (4.7) | |
| AA | 1 (1.6) | 1 (1.6) | 1 (1.6) | |
| rs9399005 | ||||
| GG | 5 (7.8) | 15 (23.4) | 6 (9.4) | 0.959 |
| GA | 7 (10.9) | 17 (26.6) | 8 (12.5) | |
| AA | 2 (3.1) | 3 (4.7) | 1 (1.6) | |
| rs12527379 | ||||
| GG | 8 (12.5) | 11 (17.2) | 4 (6.2) | 0.506 |
| GA | 4 (6.2) | 16 (25.0) | 7 (10.9) | |
| AA | 2 (3.1) | 8 (12.5) | 4 (6.2) | |
CI, complexity index.