Literature DB >> 25501941

Using EMBL-EBI Services via Web Interface and Programmatically via Web Services.

Rodrigo Lopez1, Andrew Cowley, Weizhong Li, Hamish McWilliam.   

Abstract

The European Bioinformatics Institute (EMBL-EBI) provides access to a wide range of databases and analysis tools that are of key importance in bioinformatics. As well as providing Web interfaces to these resources, Web Services are available using SOAP and REST protocols that enable programmatic access to our resources and allow their integration into other applications and analytical workflows. This unit describes the various options available to a typical researcher or bioinformatician who wishes to use our resources via Web interface or programmatically via a range of programming languages.
Copyright © 2014 John Wiley & Sons, Inc.

Entities:  

Keywords:  Programmatic access; REST; SOAP; Web Services; analytical pipelines; workflows

Mesh：

Year:  2014        PMID： 25501941      PMCID： PMC4312015          DOI： 10.1002/0471250953.bi0312s48

Source DB:  PubMed          Journal:  Curr Protoc Bioinformatics        ISSN： 1934-3396


  29 in total

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Journal:  Nucleic Acids Res       Date:  2002-01-01       Impact factor: 16.971

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Journal:  Genomics       Date:  1991-11       Impact factor: 5.736

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Journal:  Hum Genomics       Date:  2004-03       Impact factor: 4.639
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  6 in total

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Authors:  Sam M Ireland; Andrew C R Martin
Journal:  Bioinform Adv       Date:  2021-09-29

2.  The EMBL-EBI bioinformatics web and programmatic tools framework.

Authors:  Weizhong Li; Andrew Cowley; Mahmut Uludag; Tamer Gur; Hamish McWilliam; Silvano Squizzato; Young Mi Park; Nicola Buso; Rodrigo Lopez
Journal:  Nucleic Acids Res       Date:  2015-04-06       Impact factor: 16.971

3.  Programmatic access to bioinformatics tools from EMBL-EBI update: 2017.

Authors:  Szymon Chojnacki; Andrew Cowley; Joon Lee; Anna Foix; Rodrigo Lopez
Journal:  Nucleic Acids Res       Date:  2017-07-03       Impact factor: 16.971

4.  Draft genome sequence of Trametes villosa (Sw.) Kreisel CCMB561, a tropical white-rot Basidiomycota from the semiarid region of Brazil.

Authors:  Dalila Souza Santos Ferreira; Rodrigo Bentes Kato; Fábio Malcher Miranda; Kenny da Costa Pinheiro; Paula Luize Camargos Fonseca; Luiz Marcelo Ribeiro Tomé; Aline Bruna Martins Vaz; Fernanda Badotti; Rommel Thiago Jucá Ramos; Bertram Brenig; Vasco Ariston de Carvalho Azevedo; Raquel Guimarães Benevides; Aristóteles Góes-Neto
Journal:  Data Brief       Date:  2018-04-25

5.  GO FEAT: a rapid web-based functional annotation tool for genomic and transcriptomic data.

Authors:  Fabricio Almeida Araujo; Debmalya Barh; Artur Silva; Luis Guimarães; Rommel Thiago Juca Ramos
Journal:  Sci Rep       Date:  2018-01-29       Impact factor: 4.379

6.  Mining the Protein Data Bank to improve prediction of changes in protein-protein binding.

Authors:  Samuel Coulbourn Flores; Athanasios Alexiou; Anastasios Glaros
Journal:  PLoS One       Date:  2021-11-02       Impact factor: 3.240
  6 in total

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