Literature DB >> 25493821

Mixed Poisson distributions in exact solutions of stochastic autoregulation models.

Srividya Iyer-Biswas1, C Jayaprakash2.   

Abstract

In this paper we study the interplay between stochastic gene expression and system design using simple stochastic models of autoactivation and autoinhibition. Using the Poisson representation, a technique whose particular usefulness in the context of nonlinear gene regulation models we elucidate, we find exact results for these feedback models in the steady state. Further, we exploit this representation to analyze the parameter spaces of each model, determine which dimensionless combinations of rates are the shape determinants for each distribution, and thus demarcate where in the parameter space qualitatively different behaviors arise. These behaviors include power-law-tailed distributions, bimodal distributions, and sub-Poisson distributions. We also show how these distribution shapes change when the strength of the feedback is tuned. Using our results, we reexamine how well the autoinhibition and autoactivation models serve their conventionally assumed roles as paradigms for noise suppression and noise exploitation, respectively.

Year:  2014        PMID: 25493821     DOI: 10.1103/PhysRevE.90.052712

Source DB:  PubMed          Journal:  Phys Rev E Stat Nonlin Soft Matter Phys        ISSN: 1539-3755


  4 in total

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Journal:  Biophys J       Date:  2020-02-25       Impact factor: 4.033

2.  Modeling bursty transcription and splicing with the chemical master equation.

Authors:  Gennady Gorin; Lior Pachter
Journal:  Biophys J       Date:  2022-02-07       Impact factor: 4.033

3.  Stochastic models of gene transcription with upstream drives: exact solution and sample path characterization.

Authors:  Justine Dattani; Mauricio Barahona
Journal:  J R Soc Interface       Date:  2017-01       Impact factor: 4.118

4.  Time-dependent propagators for stochastic models of gene expression: an analytical method.

Authors:  Frits Veerman; Carsten Marr; Nikola Popović
Journal:  J Math Biol       Date:  2017-12-15       Impact factor: 2.259

  4 in total

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