Literature DB >> 25493538

Elephant natural history: a genomic perspective.

Alfred L Roca1, Yasuko Ishida, Adam L Brandt, Neal R Benjamin, Kai Zhao, Nicholas J Georgiadis.   

Abstract

We review DNA-based studies of elephants and recently extinct proboscideans. The evidence indicates that little or no nuclear gene flow occurs between African savanna elephants (Loxodonta africana) and African forest elephants (Loxodonta cyclotis), establishing that they comprise separate species. In all elephant species, males disperse, whereas females remain with their natal social group, leading to discordance in the phylogeography of nuclear and mitochondrial DNA patterns. Improvements in ancient DNA methods have permitted sequences to be generated from an increasing number of proboscidean fossils and have definitively established that the Asian elephant (Elephas maximus) is the closest living relative of the extinct woolly mammoth (Mammuthus primigenius). DNA-based methods have been developed to determine the geographic provenance of confiscated ivory in an effort to aid the conservation of elephants.

Entities:  

Keywords:  conservation; evolution; mammoths; mitonuclear discordance; taxonomy

Mesh:

Substances:

Year:  2014        PMID: 25493538     DOI: 10.1146/annurev-animal-022114-110838

Source DB:  PubMed          Journal:  Annu Rev Anim Biosci        ISSN: 2165-8102            Impact factor:   8.923


  9 in total

1.  Complete genomes reveal signatures of demographic and genetic declines in the woolly mammoth.

Authors:  Eleftheria Palkopoulou; Swapan Mallick; Pontus Skoglund; Jacob Enk; Nadin Rohland; Heng Li; Ayça Omrak; Sergey Vartanyan; Hendrik Poinar; Anders Götherström; David Reich; Love Dalén
Journal:  Curr Biol       Date:  2015-04-23       Impact factor: 10.834

2.  A comprehensive genomic history of extinct and living elephants.

Authors:  Eleftheria Palkopoulou; Mark Lipson; Swapan Mallick; Svend Nielsen; Nadin Rohland; Sina Baleka; Emil Karpinski; Atma M Ivancevic; Thu-Hien To; R Daniel Kortschak; Joy M Raison; Zhipeng Qu; Tat-Jun Chin; Kurt W Alt; Stefan Claesson; Love Dalén; Ross D E MacPhee; Harald Meller; Alfred L Roca; Oliver A Ryder; David Heiman; Sarah Young; Matthew Breen; Christina Williams; Bronwen L Aken; Magali Ruffier; Elinor Karlsson; Jeremy Johnson; Federica Di Palma; Jessica Alfoldi; David L Adelson; Thomas Mailund; Kasper Munch; Kerstin Lindblad-Toh; Michael Hofreiter; Hendrik Poinar; David Reich
Journal:  Proc Natl Acad Sci U S A       Date:  2018-02-26       Impact factor: 11.205

3.  Systematic review on the conservation genetics of African savannah elephants.

Authors:  Daniel Zacarias; Luis Mauricio Bini; Rafael Loyola
Journal:  PeerJ       Date:  2016-10-19       Impact factor: 2.984

4.  Demography of a forest elephant population.

Authors:  Andrea K Turkalo; Peter H Wrege; George Wittemyer
Journal:  PLoS One       Date:  2018-02-15       Impact factor: 3.240

5.  Single-nucleotide polymorphism discovery and panel characterization in the African forest elephant.

Authors:  Stéphanie Bourgeois; Helen Senn; Jenny Kaden; John B Taggart; Rob Ogden; Kathryn J Jeffery; Nils Bunnefeld; Katharine Abernethy; Ross McEwing
Journal:  Ecol Evol       Date:  2018-01-24       Impact factor: 2.912

6.  Evolutionary and demographic processes shaping geographic patterns of genetic diversity in a keystone species, the African forest elephant (Loxodonta cyclotis).

Authors:  Yasuko Ishida; Natalie A Gugala; Nicholas J Georgiadis; Alfred L Roca
Journal:  Ecol Evol       Date:  2018-04-19       Impact factor: 2.912

7.  Asian elephants exhibit post-reproductive lifespans.

Authors:  Simon N Chapman; John Jackson; Win Htut; Virpi Lummaa; Mirkka Lahdenperä
Journal:  BMC Evol Biol       Date:  2019-10-21       Impact factor: 3.260

8.  Revisiting traditional SSR based methodologies available for elephant genetic studies.

Authors:  M S L R P Marasinghe; R M R Nilanthi; H A B M Hathurusinghe; M G C Sooriyabandara; C H W M R B Chandrasekara; K A N C Jayawardana; M M Kodagoda; R C Rajapakse; P C G Bandaranayake
Journal:  Sci Rep       Date:  2021-04-22       Impact factor: 4.379

9.  Development and characterization of microsatellite markers in the African forest elephant (Loxodonta cyclotis).

Authors:  Natalie A Gugala; Yasuko Ishida; Nicholas J Georgiadis; Alfred L Roca
Journal:  BMC Res Notes       Date:  2016-07-26
  9 in total

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