Literature DB >> 25492625

Image based validation of dynamical models for cell reorientation.

Robert Lockley1, Graham Ladds2, Till Bretschneider1.   

Abstract

A key feature of directed cell movement is the ability of cells to reorient quickly in response to changes in the direction of an extracellular stimulus. Mathematical models have suggested quite different regulatory mechanisms to explain reorientation, raising the question of how we can validate these models in a rigorous way. In this study, we fit three reaction-diffusion models to experimental data of Dictyostelium amoebae reorienting in response to alternating gradients of mechanical shear flow. The experimental readouts we use to fit are spatio-temporal distributions of a fluorescent reporter for cortical F-actin labeling the cell front. Experiments performed under different conditions are fitted simultaneously to challenge the models with different types of cellular dynamics. Although the model proposed by Otsuji is unable to provide a satisfactory fit, those suggested by Meinhardt and Levchenko fit equally well. Further, we show that reduction of the three-variable Meinhardt model to a two-variable model also provides an excellent fit, but has the advantage of all parameters being uniquely identifiable. Our work demonstrates that model selection and identifiability analysis, commonly applied to temporal dynamics problems in systems biology, can be a powerful tool when extended to spatio-temporal imaging data.
© 2014 The Authors. Published by Wiley Periodicals, Inc. on behalf of The International Society for Advancement of Cytometry.

Entities:  

Keywords:  Dictyostelium; actin; cell reorientation; fluorescence microscopy; identifiability analysis; image based model fitting; spatio-temporal pattern formation

Mesh:

Substances:

Year:  2014        PMID: 25492625      PMCID: PMC4890678          DOI: 10.1002/cyto.a.22600

Source DB:  PubMed          Journal:  Cytometry A        ISSN: 1552-4922            Impact factor:   4.355


  30 in total

1.  Time-resolved responses to chemoattractant, characteristic of the front and tail of Dictyostelium cells.

Authors:  Martin Etzrodt; Hellen C F Ishikawa; Jeremie Dalous; Annette Müller-Taubenberger; Till Bretschneider; Günther Gerisch
Journal:  FEBS Lett       Date:  2006-11-20       Impact factor: 4.124

2.  Structural and practical identifiability analysis of partially observed dynamical models by exploiting the profile likelihood.

Authors:  A Raue; C Kreutz; T Maiwald; J Bachmann; M Schilling; U Klingmüller; J Timmer
Journal:  Bioinformatics       Date:  2009-06-08       Impact factor: 6.937

3.  Analysis of cell movement by simultaneous quantification of local membrane displacement and fluorescent intensities using Quimp2.

Authors:  Leonard Bosgraaf; Peter J M van Haastert; Till Bretschneider
Journal:  Cell Motil Cytoskeleton       Date:  2009-03

4.  Intracellular encoding of spatiotemporal guidance cues in a self-organizing signaling system for chemotaxis in Dictyostelium cells.

Authors:  Tatsuo Shibata; Masatoshi Nishikawa; Satomi Matsuoka; Masahiro Ueda
Journal:  Biophys J       Date:  2013-11-05       Impact factor: 4.033

Review 5.  Life at the leading edge.

Authors:  Anne J Ridley
Journal:  Cell       Date:  2011-06-24       Impact factor: 41.582

6.  Cellular memory in eukaryotic chemotaxis.

Authors:  Monica Skoge; Haicen Yue; Michael Erickstad; Albert Bae; Herbert Levine; Alex Groisman; William F Loomis; Wouter-Jan Rappel
Journal:  Proc Natl Acad Sci U S A       Date:  2014-09-23       Impact factor: 11.205

Review 7.  Self-organization of protrusions and polarity during eukaryotic chemotaxis.

Authors:  Brian R Graziano; Orion D Weiner
Journal:  Curr Opin Cell Biol       Date:  2014-07-05       Impact factor: 8.382

Review 8.  Changing directions in the study of chemotaxis.

Authors:  Robert R Kay; Paul Langridge; David Traynor; Oliver Hoeller
Journal:  Nat Rev Mol Cell Biol       Date:  2008-06       Impact factor: 94.444

Review 9.  A comparison of mathematical models for polarization of single eukaryotic cells in response to guided cues.

Authors:  Alexandra Jilkine; Leah Edelstein-Keshet
Journal:  PLoS Comput Biol       Date:  2011-04-28       Impact factor: 4.475

10.  Identification of biomolecule mass transport and binding rate parameters in living cells by inverse modeling.

Authors:  Kouroush Sadegh Zadeh; Hubert J Montas; Adel Shirmohammadi
Journal:  Theor Biol Med Model       Date:  2006-10-11       Impact factor: 2.432

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  6 in total

Review 1.  Progress and perspectives in signal transduction, actin dynamics, and movement at the cell and tissue level: lessons from Dictyostelium.

Authors:  Till Bretschneider; Hans G Othmer; Cornelis J Weijer
Journal:  Interface Focus       Date:  2016-10-06       Impact factor: 3.906

2.  Quantitative imaging of Rac1 activity in Dictyostelium cells with a fluorescently labelled GTPase-binding domain from DPAKa kinase.

Authors:  Maja Marinović; Marko Šoštar; Vedrana Filić; Vlatka Antolović; Igor Weber
Journal:  Histochem Cell Biol       Date:  2016-04-28       Impact factor: 4.304

3.  Mechanisms of Cell Polarization.

Authors:  Wouter-Jan Rappel; Leah Edelstein-Keshet
Journal:  Curr Opin Syst Biol       Date:  2017-04-12

4.  BioFlow: a non-invasive, image-based method to measure speed, pressure and forces inside living cells.

Authors:  Aleix Boquet-Pujadas; Timothée Lecomte; Maria Manich; Roman Thibeaux; Elisabeth Labruyère; Nancy Guillén; Jean-Christophe Olivo-Marin; Alexandre C Dufour
Journal:  Sci Rep       Date:  2017-08-23       Impact factor: 4.379

5.  QuimP: analyzing transmembrane signalling in highly deformable cells.

Authors:  Piotr Baniukiewicz; Sharon Collier; Till Bretschneider
Journal:  Bioinformatics       Date:  2018-08-01       Impact factor: 6.937

Review 6.  Bridging from single to collective cell migration: A review of models and links to experiments.

Authors:  Andreas Buttenschön; Leah Edelstein-Keshet
Journal:  PLoS Comput Biol       Date:  2020-12-10       Impact factor: 4.475

  6 in total

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