| Literature DB >> 25487558 |
H R Z Elabdeen1, M Mustafa1, H Hasturk2, V Klepac-Ceraj3,4, R W Ali5, B J Paster3,6, T Van Dyke2, A I Bolstad1.
Abstract
BACKGROUND ANDEntities:
Keywords: PCR; human oral microbe identification microarrays; plaque; saliva
Mesh:
Year: 2014 PMID: 25487558 PMCID: PMC4646740 DOI: 10.1111/jre.12250
Source DB: PubMed Journal: J Periodontal Res ISSN: 0022-3484 Impact factor: 4.419
Fig. 1Flow chart of participants and methods used in this study. AgP, aggressive periodontitis; HOMIM, human oral microbe identification microarrays; qPCR, quantitative polymerase chain reaction.
Clinical parameters of patients with AgP
| Clinical parameters | GAgP | LAgP |
|---|---|---|
| Probing pocket depth | 3.7 ± 0.6 | 3.0 ± 0.8 |
| Clinical attachment level | 4.0 ± 2.2 | 2.9 ± 2.3 |
| Bleeding on probing | 0.8 ± 0.4 | 0.6 ± 0.5 |
| Gingival index | 2.7 ± 0.7 | 2.6 ± 0.7 |
| Plaque index | 4.1 ± 1.3 | 4.0 ± 2.0 |
AgP, aggressive periodontitis; GAgP, generalized aggressive periodontitis; LAgP, localized aggressive periodontitis. Mann–Whitney test was used to test for difference between LAgP and GAgP.
Mean ± SD.
Measured in millimeters.
Bleeding on probing for all sites of all patients.
Fig. 2Bacterial taxa significantly different in Sudanese subjects with AgP compared with controls when analyzed by HOMIM. The x-axis indicates the proportion of individuals in the cohorts that tested positive by HOMIM for the respective bacteria listed on the left in the figure (p < 0.05; Mann–Whitney test). Black bar, patients with AgP; white bar, controls; AgP, aggressive periodontitis; HOMIM, human oral microbe identification microarrays.
Fig. 3Distribution of subgingival bacterial taxa measured by checkerboard. Profiles of bacterial DNA probe counts (mean) (× 105 cells) of Sudanese patients with AgP and controls. The bacterial taxa are listed on the x-axis in alphabetical order. *Significantly different (p < 0.05; Mann–Whitney test). Statistical significance was calculated only for bacteria present above the detection limit (> 100,000 cells). P. gingivalis 1, 2 and 3 represent strains 33, 277, 381 and A7436, respectively, and F. nucleatum ssp. vincentii 1 and 2 represent strains 49, 256 and 364, respectively.
Fig. 4Detection of the JP2 clone of A. actinomycetemcomitans in subgingival plaque samples and positive controls by polymerase chain reaction using the Ltx3 and the Ltx4 primer pairs. Lane 1: DNA marker (100 bp ladder; Invitrogen, Carlsbad, CA, USA); lane 2: JP2-positive control; lanes 3–4: JP2-negative plaque samples; lane 5: JP2- and A. actinomycetemcomitans-negative plaque sample; lane 6: 1 kb DNA marker starting at 0.5 kb (New England Biolabs, Hitchin, Hertfordshire, UK); lane 7: JP2-positive sample.