Literature DB >> 25486330

Targeting conformational plasticity of protein kinases.

Michael Tong1, Markus A Seeliger.   

Abstract

The quest for ever more selective kinase inhibitors as potential future drugs has yielded a large repertoire of chemical probes that are selective for specific kinase conformations. These probes have been useful tools to obtain structural snapshots of kinase conformational plasticity. Similarly, kinetic and thermodynamic inhibitor binding experiments provide glimpses at the time scales and energetics of conformational interconversions. These experimental insights are complemented by computational predictions of conformational energy landscapes and simulations of conformational transitions and of the process of inhibitors binding to the protein kinase domain. A picture emerges in which highly selective inhibitors capitalize on the dynamic nature of kinases.

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Year:  2014        PMID: 25486330     DOI: 10.1021/cb500870a

Source DB:  PubMed          Journal:  ACS Chem Biol        ISSN: 1554-8929            Impact factor:   5.100


  28 in total

1.  How ATP-Competitive Inhibitors Allosterically Modulate Tyrosine Kinases That Contain a Src-like Regulatory Architecture.

Authors:  Linglan Fang; Jessica Vilas-Boas; Sujata Chakraborty; Zachary E Potter; Ames C Register; Markus A Seeliger; Dustin J Maly
Journal:  ACS Chem Biol       Date:  2020-06-23       Impact factor: 5.100

2.  Effects of rigidity on the selectivity of protein kinase inhibitors.

Authors:  Amir Assadieskandar; Caiqun Yu; Pierre Maisonneuve; Xu Liu; Ying-Chu Chen; G K Surya Prakash; Igor Kurinov; Frank Sicheri; Chao Zhang
Journal:  Eur J Med Chem       Date:  2018-01-31       Impact factor: 6.514

3.  Design and Synthesis of Potent and Selective PIM Kinase Inhibitors by Targeting Unique Structure of ATP-Binding Pocket.

Authors:  Hirofumi Nakano; Tsukasa Hasegawa; Hirotatsu Kojima; Takayoshi Okabe; Tetsuo Nagano
Journal:  ACS Med Chem Lett       Date:  2017-04-03       Impact factor: 4.345

4.  Pharmacophore and molecular dynamics based activity profiling of natural products for kinases involved in lung cancer.

Authors:  Pankaj Kumar Singh; Om Silakari
Journal:  J Mol Model       Date:  2018-10-20       Impact factor: 1.810

5.  How Electrostatic Coupling Enables Conformational Plasticity in a Tyrosine Kinase.

Authors:  Cheng-Chieh Tsai; Zhi Yue; Jana Shen
Journal:  J Am Chem Soc       Date:  2019-09-13       Impact factor: 15.419

6.  Discovering New Casein Kinase 1d Inhibitors with an Innovative Molecular Dynamics Enabled Virtual Screening Workflow.

Authors:  Simone Sciabola; Paolo Benedetti; Giulia D'Arrigo; Rubben Torella; Massimo Baroni; Gabriele Cruciani; Francesca Spyrakis
Journal:  ACS Med Chem Lett       Date:  2018-12-13       Impact factor: 4.345

7.  Structural and Functional Analysis of the Allosteric Inhibition of IRE1α with ATP-Competitive Ligands.

Authors:  Hannah C Feldman; Michael Tong; Likun Wang; Rosa Meza-Acevedo; Theodore A Gobillot; Ivan Lebedev; Micah J Gliedt; Sanjay B Hari; Arinjay K Mitra; Bradley J Backes; Feroz R Papa; Markus A Seeliger; Dustin J Maly
Journal:  ACS Chem Biol       Date:  2016-06-09       Impact factor: 5.100

8.  Structure-Based Assignment of Ile, Leu, and Val Methyl Groups in the Active and Inactive Forms of the Mitogen-Activated Protein Kinase Extracellular Signal-Regulated Kinase 2.

Authors:  Yao Xiao; Lisa R Warner; Michael P Latham; Natalie G Ahn; Arthur Pardi
Journal:  Biochemistry       Date:  2015-07-13       Impact factor: 3.162

9.  Structural and Biochemical Basis for Intracellular Kinase Inhibition by Src-specific Peptidic Macrocycles.

Authors:  Saadat Aleem; George Georghiou; Ralph E Kleiner; Kip Guja; Barbara P Craddock; Agatha Lyczek; Alix I Chan; Miguel Garcia-Diaz; W Todd Miller; David R Liu; Markus A Seeliger
Journal:  Cell Chem Biol       Date:  2016-09-01       Impact factor: 8.116

10.  Parallel Chemoselective Profiling for Mapping Protein Structure.

Authors:  Zachary E Potter; Ho-Tak Lau; Sujata Chakraborty; Linglan Fang; Miklos Guttman; Shao-En Ong; Douglas M Fowler; Dustin J Maly
Journal:  Cell Chem Biol       Date:  2020-07-09       Impact factor: 8.116

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