Literature DB >> 25485836

A conditional piggyBac transposition system for genetic screening in mice identifies oncogenic networks in pancreatic cancer.

Roland Rad1, Lena Rad2, Wei Wang2, Alexander Strong2, Hannes Ponstingl2, Iraad F Bronner2, Matthew Mayho2, Katja Steiger3, Julia Weber4, Maren Hieber5, Christian Veltkamp5, Stefan Eser5, Ulf Geumann4, Rupert Öllinger5, Magdalena Zukowska5, Maxim Barenboim4, Roman Maresch4, Juan Cadiñanos6, Mathias Friedrich2, Ignacio Varela7, Fernando Constantino-Casas8, Aaron Sarver9, Jelle Ten Hoeve10, Haydn Prosser2, Barbara Seidler5, Judith Bauer11, Mathias Heikenwälder11, Emmanouil Metzakopian2, Anne Krug5, Ursula Ehmer5, Günter Schneider5, Thomas Knösel12, Petra Rümmele13, Daniela Aust14, Robert Grützmann15, Christian Pilarsky15, Zemin Ning2, Lodewyk Wessels10, Roland M Schmid5, Michael A Quail2, George Vassiliou2, Irene Esposito16, Pentao Liu2, Dieter Saur4, Allan Bradley2.   

Abstract

Here we describe a conditional piggyBac transposition system in mice and report the discovery of large sets of new cancer genes through a pancreatic insertional mutagenesis screen. We identify Foxp1 as an oncogenic transcription factor that drives pancreatic cancer invasion and spread in a mouse model and correlates with lymph node metastasis in human patients with pancreatic cancer. The propensity of piggyBac for open chromatin also enabled genome-wide screening for cancer-relevant noncoding DNA, which pinpointed a Cdkn2a cis-regulatory region. Histologically, we observed different tumor subentities and discovered associated genetic events, including Fign insertions in hepatoid pancreatic cancer. Our studies demonstrate the power of genetic screening to discover cancer drivers that are difficult to identify by other approaches to cancer genome analysis, such as downstream targets of commonly mutated human cancer genes. These piggyBac resources are universally applicable in any tissue context and provide unique experimental access to the genetic complexity of cancer.

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Year:  2014        PMID: 25485836     DOI: 10.1038/ng.3164

Source DB:  PubMed          Journal:  Nat Genet        ISSN: 1061-4036            Impact factor:   38.330


  38 in total

1.  Resistance mechanisms to TP53-MDM2 inhibition identified by in vivo piggyBac transposon mutagenesis screen in an Arf-/- mouse model.

Authors:  Emilie A Chapeau; Agnieszka Gembarska; Eric Y Durand; Emeline Mandon; Claire Estadieu; Vincent Romanet; Marion Wiesmann; Ralph Tiedt; Joseph Lehar; Antoine de Weck; Roland Rad; Louise Barys; Sebastien Jeay; Stephane Ferretti; Audrey Kauffmann; Esther Sutter; Armelle Grevot; Pierre Moulin; Masato Murakami; William R Sellers; Francesco Hofmann; Michael Rugaard Jensen
Journal:  Proc Natl Acad Sci U S A       Date:  2017-03-06       Impact factor: 11.205

Review 2.  In vivo functional screening for systems-level integrative cancer genomics.

Authors:  Julia Weber; Christian J Braun; Dieter Saur; Roland Rad
Journal:  Nat Rev Cancer       Date:  2020-07-07       Impact factor: 60.716

3.  Endogenous Transposase Source in Human Cells Mobilizes piggyBac Transposons.

Authors:  Zoltán Ivics
Journal:  Mol Ther       Date:  2016-05       Impact factor: 11.454

Review 4.  piggyBac-ing models and new therapeutic strategies.

Authors:  Lauren E Woodard; Matthew H Wilson
Journal:  Trends Biotechnol       Date:  2015-07-23       Impact factor: 19.536

Review 5.  Preclinical models of pancreatic ductal adenocarcinoma.

Authors:  Chang-Il Hwang; Sylvia F Boj; Hans Clevers; David A Tuveson
Journal:  J Pathol       Date:  2015-11-14       Impact factor: 7.996

Review 6.  Transposons As Tools for Functional Genomics in Vertebrate Models.

Authors:  Koichi Kawakami; David A Largaespada; Zoltán Ivics
Journal:  Trends Genet       Date:  2017-09-06       Impact factor: 11.639

7.  Chronic liver injury alters driver mutation profiles in hepatocellular carcinoma in mice.

Authors:  Jesse D Riordan; Charlotte R Feddersen; Barbara R Tschida; Pauline J Beckmann; Vincent W Keng; Michael A Linden; Khalid Amin; Christopher S Stipp; David A Largaespada; Adam J Dupuy
Journal:  Hepatology       Date:  2018-01-26       Impact factor: 17.425

8.  Genome-wide transposon screening and quantitative insertion site sequencing for cancer gene discovery in mice.

Authors:  Mathias J Friedrich; Lena Rad; Iraad F Bronner; Alexander Strong; Wei Wang; Julia Weber; Matthew Mayho; Hannes Ponstingl; Thomas Engleitner; Carolyn Grove; Anja Pfaus; Dieter Saur; Juan Cadiñanos; Michael A Quail; George S Vassiliou; Pentao Liu; Allan Bradley; Roland Rad
Journal:  Nat Protoc       Date:  2017-01-12       Impact factor: 13.491

9.  SETBP1 overexpression acts in the place of class-defining mutations to drive FLT3-ITD-mutant AML.

Authors:  Suruchi Pacharne; Oliver M Dovey; Jonathan L Cooper; Muxin Gu; Mathias J Friedrich; Sandeep S Rajan; Maxim Barenboim; Grace Collord; M S Vijayabaskar; Hannes Ponstingl; Etienne De Braekeleer; Ruben Bautista; Milena Mazan; Roland Rad; Konstantinos Tzelepis; Penny Wright; Malgorzata Gozdecka; George S Vassiliou
Journal:  Blood Adv       Date:  2021-05-11

10.  A viral toolkit for recording transcription factor-DNA interactions in live mouse tissues.

Authors:  Alexander J Cammack; Arnav Moudgil; Jiayang Chen; Michael J Vasek; Mark Shabsovich; Katherine McCullough; Allen Yen; Tomas Lagunas; Susan E Maloney; June He; Xuhua Chen; Misha Hooda; Michael N Wilkinson; Timothy M Miller; Robi D Mitra; Joseph D Dougherty
Journal:  Proc Natl Acad Sci U S A       Date:  2020-04-16       Impact factor: 11.205

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