Literature DB >> 25484812

Crystal structure of difenoconazole.

Seonghwa Cho1, Gihaeng Kang1, Sangjin Lee1, Tae Ho Kim1.   

Abstract

In the title compound difenoconazole [systematic name: 1-({2-[2-chloro-4-(4-chloro-phen-oxy)phen-yl]-4-methyl-1,3-dioxolan-2-yl}meth-yl)-1H-1,2,4-triazole], C19H17Cl2N3O3, the dihedral angle between the planes of the 4-chloro-phenyl and 2-chloro-phenyl rings is 79.34 (9)°, while the dihedral angle between the planes of the triazole ring and the dioxolanyl group is 59.45 (19)°. In the crystal, pairs of C-H⋯N hydrogen bonds link adjacent mol-ecules, forming dimers with R 2 (2)(6) loops. In addition, the dimers are linked by C-H⋯O hydrogen bonds, resulting in a three-dimensional architecture. Disorder was modeled for one C atom of the dioxolanyl group over two sets of sites with an occupancy ratio of 0.566 (17):0.434 (17).

Entities:  

Keywords:  crystal structure; difenoconazole; hydrogen bonds; triazole fungicide

Year:  2014        PMID: 25484812      PMCID: PMC4257337          DOI: 10.1107/S1600536814022429

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For information on the toxicity and fungicidal properties of the title compound, see: Dong et al. (2013 ▶); Mu et al. (2013 ▶). For a related crystal structure, see: Jeon et al. (2013 ▶).

Experimental

Crystal data

C19H17Cl2N3O3 M = 406.26 Monoclinic, a = 25.6913 (13) Å b = 10.0220 (4) Å c = 14.6417 (6) Å β = 93.439 (4)° V = 3763.1 (3) Å3 Z = 8 Mo Kα radiation μ = 0.37 mm−1 T = 173 K 0.50 × 0.42 × 0.34 mm

Data collection

Bruker APEXII CCD diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2009 ▶) T min = 0.837, T max = 0.885 28161 measured reflections 3694 independent reflections 3251 reflections with I > 2σ(I) R int = 0.040

Refinement

R[F 2 > 2σ(F 2)] = 0.059 wR(F 2) = 0.160 S = 1.06 3694 reflections 254 parameters H-atom parameters constrained Δρmax = 1.08 e Å−3 Δρmin = −0.82 e Å−3

Data collection: APEX2 (Bruker, 2009 ▶); cell refinement: SAINT (Bruker, 2009 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXTL (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXTL; molecular graphics: DIAMOND (Brandenburg, 2010 ▶); software used to prepare material for publication: SHELXTL. Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536814022429/hg5412sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536814022429/hg5412Isup2.hkl Click here for additional data file. Supporting information file. DOI: 10.1107/S1600536814022429/hg5412Isup3.cml Click here for additional data file. . DOI: 10.1107/S1600536814022429/hg5412fig1.tif The asymmetric unit of the title compound with the atom numbering scheme. Displacement ellipsoids are drawn at the 50% probability level. H atoms are shown as small spheres of arbitrary radius. Only atoms of the major disorder components are shown. Click here for additional data file. . DOI: 10.1107/S1600536814022429/hg5412fig2.tif Crystal packing of the title compound with C—H⋯N and C—H⋯O hydrogen bonds are shown as dashed lines. H atoms bonded to C atoms have been omitted for clarity, except H atoms of hydrogen bonds. Only atoms of the major disorder components are shown. CCDC reference: 1028719 Additional supporting information: crystallographic information; 3D view; checkCIF report
C19H17Cl2N3O3F(000) = 1680
Mr = 406.26Dx = 1.434 Mg m3
Monoclinic, C2/cMo Kα radiation, λ = 0.71073 Å
Hall symbol: -C 2ycCell parameters from 9891 reflections
a = 25.6913 (13) Åθ = 2.2–27.5°
b = 10.0220 (4) ŵ = 0.37 mm1
c = 14.6417 (6) ÅT = 173 K
β = 93.439 (4)°Block, colourless
V = 3763.1 (3) Å30.50 × 0.42 × 0.34 mm
Z = 8
Bruker APEXII CCD diffractometer3694 independent reflections
Radiation source: fine-focus sealed tube3251 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.040
φ and ω scansθmax = 26.0°, θmin = 1.6°
Absorption correction: multi-scan (SADABS; Bruker, 2009)h = −31→31
Tmin = 0.837, Tmax = 0.885k = −12→11
28161 measured reflectionsl = −16→18
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.059Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.160H-atom parameters constrained
S = 1.06w = 1/[σ2(Fo2) + (0.0826P)2 + 11.4923P] where P = (Fo2 + 2Fc2)/3
3694 reflections(Δ/σ)max = 0.001
254 parametersΔρmax = 1.08 e Å3
0 restraintsΔρmin = −0.82 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/UeqOcc. (<1)
Cl10.42744 (2)0.49115 (6)0.12241 (5)0.0266 (2)
Cl20.82170 (3)0.20023 (10)0.20260 (9)0.0669 (4)
O10.62242 (7)0.48045 (19)0.13830 (15)0.0310 (5)
O20.39803 (7)0.19880 (19)0.13311 (13)0.0278 (4)
O30.44578 (7)0.04892 (18)0.05807 (14)0.0310 (5)
N10.35985 (8)0.1646 (2)−0.04986 (15)0.0238 (5)
N20.35747 (10)0.0522 (3)−0.10262 (18)0.0351 (6)
N30.27774 (9)0.1059 (2)−0.05524 (16)0.0311 (5)
C10.48411 (10)0.2656 (3)0.08715 (18)0.0234 (5)
C20.48477 (10)0.4006 (2)0.11281 (17)0.0217 (5)
C30.53104 (10)0.4691 (3)0.13124 (17)0.0232 (5)
H30.53050.56000.14960.028*
C40.57807 (10)0.4041 (3)0.12269 (18)0.0241 (5)
C50.57897 (10)0.2708 (3)0.09724 (19)0.0280 (6)
H50.61120.22600.09170.034*
C60.53236 (10)0.2042 (3)0.08011 (19)0.0274 (6)
H60.53320.11290.06280.033*
C70.66965 (10)0.4125 (3)0.15259 (19)0.0246 (5)
C80.70587 (12)0.4212 (3)0.0878 (2)0.0368 (7)
H80.69850.47040.03310.044*
C90.75346 (12)0.3571 (3)0.1033 (3)0.0446 (8)
H90.77920.36250.05960.054*
C100.76287 (11)0.2854 (3)0.1831 (2)0.0372 (7)
C110.72675 (12)0.2774 (3)0.2478 (2)0.0337 (7)
H110.73390.22730.30220.040*
C120.67983 (11)0.3430 (3)0.23296 (19)0.0308 (6)
H120.65470.34040.27790.037*
C130.43413 (10)0.1863 (2)0.06428 (18)0.0235 (5)
C140.39958 (15)0.0777 (3)0.1848 (2)0.0465 (8)
H14A0.36460.05590.20530.056*0.566 (17)
H14B0.42410.08600.23930.056*0.566 (17)
H14C0.40470.09700.25100.056*0.434 (17)
H14D0.36660.02740.17380.056*0.434 (17)
C150.4172 (4)−0.0259 (7)0.1230 (6)0.042 (3)0.566 (17)
H150.3851−0.05940.08830.064*0.566 (17)
C15'0.4417 (4)0.0044 (8)0.1547 (6)0.040 (3)0.434 (17)
H15'0.47360.03830.18990.059*0.434 (17)
C160.4442 (2)−0.1428 (4)0.1591 (3)0.0714 (13)
H16A0.4771−0.15340.12930.107*0.566 (17)
H16B0.4223−0.22180.14720.107*0.566 (17)
H16C0.4514−0.13250.22520.107*0.566 (17)
H16D0.4503−0.17840.09830.107*0.434 (17)
H16E0.4111−0.17770.17920.107*0.434 (17)
H16F0.4727−0.16990.20250.107*0.434 (17)
C170.40879 (10)0.2322 (3)−0.02759 (18)0.0245 (5)
H17A0.40260.3296−0.02540.029*
H17B0.43300.2148−0.07640.029*
C180.31254 (10)0.1939 (3)−0.02307 (18)0.0248 (5)
H180.30480.26800.01420.030*
C190.30749 (12)0.0227 (3)−0.1031 (2)0.0357 (7)
H190.2932−0.0524−0.13510.043*
U11U22U33U12U13U23
Cl10.0242 (3)0.0184 (3)0.0374 (4)0.0054 (2)0.0048 (3)−0.0025 (2)
Cl20.0336 (5)0.0520 (6)0.1140 (9)0.0139 (4)−0.0048 (5)0.0196 (5)
O10.0219 (9)0.0197 (10)0.0513 (13)−0.0017 (7)0.0017 (8)0.0011 (8)
O20.0288 (10)0.0241 (10)0.0310 (10)0.0005 (8)0.0061 (8)0.0041 (7)
O30.0271 (10)0.0141 (9)0.0518 (13)0.0024 (7)0.0020 (8)−0.0014 (8)
N10.0232 (11)0.0182 (11)0.0298 (12)0.0005 (8)0.0003 (8)−0.0026 (8)
N20.0320 (13)0.0267 (13)0.0462 (15)0.0009 (10)0.0000 (11)−0.0134 (11)
N30.0256 (12)0.0322 (13)0.0350 (13)−0.0012 (10)−0.0010 (9)0.0043 (10)
C10.0239 (13)0.0178 (12)0.0283 (13)0.0020 (10)0.0007 (10)0.0001 (10)
C20.0234 (12)0.0173 (12)0.0247 (13)0.0045 (10)0.0039 (10)0.0013 (9)
C30.0271 (13)0.0150 (12)0.0278 (13)0.0011 (10)0.0036 (10)0.0015 (10)
C40.0231 (13)0.0210 (13)0.0280 (13)−0.0014 (10)0.0013 (10)0.0025 (10)
C50.0240 (13)0.0230 (14)0.0370 (15)0.0055 (10)0.0004 (11)−0.0014 (11)
C60.0261 (13)0.0181 (13)0.0377 (15)0.0032 (10)0.0000 (11)−0.0027 (10)
C70.0193 (12)0.0183 (12)0.0359 (14)−0.0016 (10)0.0004 (10)−0.0001 (10)
C80.0359 (16)0.0347 (16)0.0406 (17)0.0062 (13)0.0089 (13)0.0149 (13)
C90.0311 (16)0.0447 (19)0.060 (2)0.0059 (14)0.0187 (14)0.0165 (16)
C100.0263 (14)0.0254 (15)0.059 (2)0.0010 (11)−0.0044 (13)0.0050 (13)
C110.0417 (16)0.0247 (14)0.0331 (15)−0.0042 (12)−0.0099 (12)0.0021 (11)
C120.0369 (15)0.0255 (14)0.0303 (14)−0.0037 (12)0.0047 (11)−0.0011 (11)
C130.0236 (12)0.0135 (12)0.0336 (14)0.0032 (10)0.0036 (10)−0.0013 (10)
C140.070 (2)0.0269 (16)0.0443 (19)−0.0014 (16)0.0185 (16)0.0100 (13)
C150.044 (5)0.025 (3)0.059 (5)−0.004 (3)0.011 (4)0.009 (3)
C15'0.040 (5)0.023 (4)0.052 (5)−0.012 (3)−0.023 (4)0.007 (3)
C160.106 (4)0.035 (2)0.074 (3)0.006 (2)0.008 (3)0.0103 (19)
C170.0224 (12)0.0213 (13)0.0300 (14)−0.0023 (10)0.0038 (10)−0.0015 (10)
C180.0233 (12)0.0229 (13)0.0281 (13)0.0023 (10)0.0012 (10)0.0018 (10)
C190.0316 (15)0.0247 (15)0.0497 (18)−0.0032 (12)−0.0065 (13)−0.0059 (12)
Cl1—C21.743 (2)C8—H80.9500
Cl2—C101.744 (3)C9—C101.380 (5)
O1—C41.380 (3)C9—H90.9500
O1—C71.396 (3)C10—C111.367 (5)
O2—C131.416 (3)C11—C121.379 (4)
O2—C141.429 (4)C11—H110.9500
O3—C131.413 (3)C12—H120.9500
O3—C151.445 (6)C13—C171.530 (4)
O3—C15'1.493 (9)C14—C15'1.401 (10)
N1—C181.332 (3)C14—C151.467 (8)
N1—N21.365 (3)C14—H14A0.9900
N1—C171.448 (3)C14—H14B0.9900
N2—C191.317 (4)C14—H14C0.9900
N3—C181.322 (4)C14—H14D0.9900
N3—C191.354 (4)C15—C161.445 (8)
C1—C61.394 (4)C15—H151.0000
C1—C21.404 (4)C15'—C161.478 (9)
C1—C131.530 (3)C15'—H15'1.0000
C2—C31.385 (4)C16—H16A0.9800
C3—C41.385 (4)C16—H16B0.9800
C3—H30.9500C16—H16C0.9800
C4—C51.387 (4)C16—H16D0.9800
C5—C61.381 (4)C16—H16E0.9800
C5—H50.9500C16—H16F0.9800
C6—H60.9500C17—H17A0.9900
C7—C81.371 (4)C17—H17B0.9900
C7—C121.379 (4)C18—H180.9500
C8—C91.388 (4)C19—H190.9500
C4—O1—C7117.1 (2)O2—C14—H14C110.5
C13—O2—C14107.6 (2)C15—C14—H14C135.6
C13—O3—C15110.2 (3)H14A—C14—H14C79.4
C13—O3—C15'101.7 (4)H14B—C14—H14C32.2
C15—O3—C15'32.3 (3)C15'—C14—H14D110.5
C18—N1—N2109.7 (2)O2—C14—H14D110.5
C18—N1—C17128.8 (2)C15—C14—H14D80.3
N2—N1—C17121.5 (2)H14A—C14—H14D32.1
C19—N2—N1101.5 (2)H14B—C14—H14D132.1
C18—N3—C19101.8 (2)H14C—C14—H14D108.7
C6—C1—C2116.7 (2)O3—C15—C16114.2 (5)
C6—C1—C13119.5 (2)O3—C15—C14103.1 (5)
C2—C1—C13123.8 (2)C16—C15—C14120.5 (7)
C3—C2—C1121.8 (2)O3—C15—H15106.0
C3—C2—Cl1116.47 (19)C16—C15—H15106.0
C1—C2—Cl1121.8 (2)C14—C15—H15106.0
C2—C3—C4119.5 (2)C14—C15'—C16122.8 (8)
C2—C3—H3120.3C14—C15'—O3103.9 (5)
C4—C3—H3120.3C16—C15'—O3109.5 (6)
O1—C4—C3116.1 (2)C14—C15'—H15'106.5
O1—C4—C5123.5 (2)C16—C15'—H15'106.5
C3—C4—C5120.4 (2)O3—C15'—H15'106.5
C6—C5—C4119.1 (2)C15—C16—C15'32.5 (3)
C6—C5—H5120.5C15—C16—H16A109.5
C4—C5—H5120.5C15'—C16—H16A97.2
C5—C6—C1122.6 (2)C15—C16—H16B109.5
C5—C6—H6118.7C15'—C16—H16B140.9
C1—C6—H6118.7H16A—C16—H16B109.5
C8—C7—C12121.4 (3)C15—C16—H16C109.5
C8—C7—O1119.0 (2)C15'—C16—H16C86.7
C12—C7—O1119.5 (2)H16A—C16—H16C109.5
C7—C8—C9119.0 (3)H16B—C16—H16C109.5
C7—C8—H8120.5C15—C16—H16D93.6
C9—C8—H8120.5C15'—C16—H16D109.5
C10—C9—C8119.2 (3)H16A—C16—H16D50.7
C10—C9—H9120.4H16B—C16—H16D70.5
C8—C9—H9120.4H16C—C16—H16D154.7
C11—C10—C9121.7 (3)C15—C16—H16E89.7
C11—C10—Cl2118.4 (2)C15'—C16—H16E109.5
C9—C10—Cl2120.0 (3)H16A—C16—H16E151.8
C10—C11—C12119.1 (3)H16B—C16—H16E42.9
C10—C11—H11120.5H16C—C16—H16E81.7
C12—C11—H11120.5H16D—C16—H16E109.5
C7—C12—C11119.6 (3)C15—C16—H16F141.8
C7—C12—H12120.2C15'—C16—H16F109.5
C11—C12—H12120.2H16A—C16—H16F68.1
O3—C13—O2106.4 (2)H16B—C16—H16F106.8
O3—C13—C17108.5 (2)H16C—C16—H16F45.4
O2—C13—C17109.7 (2)H16D—C16—H16F109.5
O3—C13—C1110.0 (2)H16E—C16—H16F109.5
O2—C13—C1112.0 (2)N1—C17—C13112.0 (2)
C17—C13—C1110.1 (2)N1—C17—H17A109.2
C15'—C14—O2106.0 (4)C13—C17—H17A109.2
C15'—C14—C1533.0 (3)N1—C17—H17B109.2
O2—C14—C15105.9 (3)C13—C17—H17B109.2
C15'—C14—H14A135.5H17A—C17—H17B107.9
O2—C14—H14A110.6N3—C18—N1111.0 (2)
C15—C14—H14A110.6N3—C18—H18124.5
C15'—C14—H14B80.2N1—C18—H18124.5
O2—C14—H14B110.6N2—C19—N3116.1 (3)
C15—C14—H14B110.6N2—C19—H19122.0
H14A—C14—H14B108.7N3—C19—H19122.0
C15'—C14—H14C110.5
C18—N1—N2—C190.1 (3)C6—C1—C13—O313.0 (3)
C17—N1—N2—C19178.1 (2)C2—C1—C13—O3−169.0 (2)
C6—C1—C2—C3−0.7 (4)C6—C1—C13—O2131.2 (2)
C13—C1—C2—C3−178.8 (2)C2—C1—C13—O2−50.8 (3)
C6—C1—C2—Cl1178.9 (2)C6—C1—C13—C17−106.5 (3)
C13—C1—C2—Cl10.8 (4)C2—C1—C13—C1771.5 (3)
C1—C2—C3—C41.2 (4)C13—O2—C14—C15'8.6 (6)
Cl1—C2—C3—C4−178.40 (19)C13—O2—C14—C15−25.8 (6)
C7—O1—C4—C3164.5 (2)C13—O3—C15—C16−147.7 (6)
C7—O1—C4—C5−17.3 (4)C15'—O3—C15—C16−68.0 (10)
C2—C3—C4—O1177.3 (2)C13—O3—C15—C14−15.2 (8)
C2—C3—C4—C5−1.0 (4)C15'—O3—C15—C1464.5 (9)
O1—C4—C5—C6−177.8 (2)C15'—C14—C15—O3−70.5 (8)
C3—C4—C5—C60.3 (4)O2—C14—C15—O324.6 (8)
C4—C5—C6—C10.1 (4)C15'—C14—C15—C1658.2 (11)
C2—C1—C6—C50.0 (4)O2—C14—C15—C16153.3 (6)
C13—C1—C6—C5178.2 (3)O2—C14—C15'—C16−153.1 (7)
C4—O1—C7—C8111.7 (3)C15—C14—C15'—C16−58.4 (10)
C4—O1—C7—C12−71.1 (3)O2—C14—C15'—O3−28.4 (8)
C12—C7—C8—C90.8 (5)C15—C14—C15'—O366.2 (7)
O1—C7—C8—C9178.0 (3)C13—O3—C15'—C1437.8 (7)
C7—C8—C9—C100.6 (5)C15—O3—C15'—C14−71.6 (9)
C8—C9—C10—C11−0.9 (5)C13—O3—C15'—C16170.7 (6)
C8—C9—C10—Cl2178.2 (3)C15—O3—C15'—C1661.3 (8)
C9—C10—C11—C12−0.2 (5)O3—C15—C16—C15'68.7 (9)
Cl2—C10—C11—C12−179.3 (2)C14—C15—C16—C15'−54.9 (11)
C8—C7—C12—C11−2.0 (4)C14—C15'—C16—C1561.5 (10)
O1—C7—C12—C11−179.1 (2)O3—C15'—C16—C15−60.7 (8)
C10—C11—C12—C71.6 (4)C18—N1—C17—C1383.7 (3)
C15—O3—C13—O2−0.1 (6)N2—N1—C17—C13−94.0 (3)
C15'—O3—C13—O2−32.6 (5)O3—C13—C17—N162.6 (3)
C15—O3—C13—C17−118.1 (6)O2—C13—C17—N1−53.3 (3)
C15'—O3—C13—C17−150.5 (5)C1—C13—C17—N1−177.0 (2)
C15—O3—C13—C1121.5 (5)C19—N3—C18—N1−0.2 (3)
C15'—O3—C13—C189.0 (5)N2—N1—C18—N30.1 (3)
C14—O2—C13—O316.2 (3)C17—N1—C18—N3−177.8 (2)
C14—O2—C13—C17133.3 (2)N1—N2—C19—N3−0.2 (4)
C14—O2—C13—C1−104.1 (3)C18—N3—C19—N20.2 (4)
D—H···AD—HH···AD···AD—H···A
C6—H6···O3i0.952.483.314 (3)146
C12—H12···O2ii0.952.403.226 (3)145
C17—H17A···O1iii0.992.583.378 (3)138
C18—H18···N3iv0.952.573.323 (4)136
Table 1

Hydrogen-bond geometry (, )

DHA DHHA D A DHA
C6H6O3i 0.952.483.314(3)146
C12H12O2ii 0.952.403.226(3)145
C17H17AO1iii 0.992.583.378(3)138
C18H18N3iv 0.952.573.323(4)136

Symmetry codes: (i) ; (ii) ; (iii) ; (iv) .

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