Literature DB >> 25484809

Crystal structure of 2-(3-fluoro-phen-yl)-5-iodo-3-methyl-sulfinyl-1-benzo-furan.

Hong Dae Choi1, Uk Lee2.   

Abstract

In the title compound, C15H10FIO2S, the dihedral angle between the planes of the benzo-furan ring system [r.m.s. deviation = 0.015 (2) Å] and the 3-fluoro-phenyl ring is 29.63 (7)°. In the crystal, mol-ecules are linked into inversion dimers along the b-axis direction by two different pairs of C-H⋯O hydrogen bonds and I⋯O [3.228 (1) Å] contacts.

Entities:  

Keywords:  3-fluoro­phen­yl; C—H⋯O hydrogen bonds; I⋯O contacts; benzo­furan; crystal structure

Year:  2014        PMID: 25484809      PMCID: PMC4257291          DOI: 10.1107/S1600536814022569

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For a related structure and background to benzo­furan derivatives, see: Choi & Lee (2014 ▶). For further synthetic details, see: Choi et al. (1999 ▶). For a review of halogen bonding, see: Politzer et al. (2007 ▶).

Experimental

Crystal data

C15H10FIO2S M = 400.19 Triclinic, a = 8.1348 (3) Å b = 8.6378 (3) Å c = 10.8350 (4) Å α = 86.063 (1)° β = 82.088 (1)° γ = 66.408 (1)° V = 690.99 (4) Å3 Z = 2 Mo Kα radiation μ = 2.48 mm−1 T = 173 K 0.45 × 0.28 × 0.11 mm

Data collection

Bruker SMART APEXII CCD diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2009 ▶) T min = 0.496, T max = 0.746 12585 measured reflections 3450 independent reflections 3226 reflections with I > 2σ(I) R int = 0.028

Refinement

R[F 2 > 2σ(F 2)] = 0.021 wR(F 2) = 0.054 S = 1.05 3450 reflections 182 parameters H-atom parameters constrained Δρmax = 0.71 e Å−3 Δρmin = −0.59 e Å−3

Data collection: APEX2 (Bruker, 2009 ▶); cell refinement: SAINT (Bruker, 2009 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 for Windows (Farrugia, 2012 ▶) and DIAMOND (Brandenburg, 1998 ▶); software used to prepare material for publication: SHELXL97. Crystal structure: contains datablock(s) I. DOI: 10.1107/S1600536814022569/qm2109sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536814022569/qm2109Isup2.hkl Click here for additional data file. Supporting information file. DOI: 10.1107/S1600536814022569/qm2109Isup3.cml Click here for additional data file. . DOI: 10.1107/S1600536814022569/qm2109fig1.tif The mol­ecular structure of the title compound with the atom-numbering scheme. Displacement ellipsoids are drawn at the 50% probability level. H atoms are presented as small spheres of arbitrary radius. Click here for additional data file. x y z x y z x y z . DOI: 10.1107/S1600536814022569/qm2109fig2.tif A view of the C—H⋯O and I⋯O inter­actions (dotted lines) in the crystal structure of the title compound. H atoms non-participating in hydrogen-bonding were omitted for clarity. [Symmetry codes: (i) −x, −y + 2, −z + 1; (ii) −x + 2, −y + 1, −z; (iii) −x + 1, −y + 2, −z + 2.] CCDC reference: 1029138 Additional supporting information: crystallographic information; 3D view; checkCIF report
C15H10FIO2SZ = 2
Mr = 400.19F(000) = 388
Triclinic, P1Dx = 1.923 Mg m3
Hall symbol: -P 1Melting point = 454–453 K
a = 8.1348 (3) ÅMo Kα radiation, λ = 0.71073 Å
b = 8.6378 (3) ÅCell parameters from 8421 reflections
c = 10.8350 (4) Åθ = 2.6–28.4°
α = 86.063 (1)°µ = 2.48 mm1
β = 82.088 (1)°T = 173 K
γ = 66.408 (1)°Block, colourless
V = 690.99 (4) Å30.45 × 0.28 × 0.11 mm
Bruker SMART APEXII CCD diffractometer3450 independent reflections
Radiation source: rotating anode3226 reflections with I > 2σ(I)
Graphite multilayer monochromatorRint = 0.028
Detector resolution: 10.0 pixels mm-1θmax = 28.4°, θmin = 1.9°
φ and ω scansh = −10→10
Absorption correction: multi-scan (SADABS; Bruker, 2009)k = −11→11
Tmin = 0.496, Tmax = 0.746l = −14→14
12585 measured reflections
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.021Hydrogen site location: difference Fourier map
wR(F2) = 0.054H-atom parameters constrained
S = 1.05w = 1/[σ2(Fo2) + (0.0277P)2 + 0.2506P] where P = (Fo2 + 2Fc2)/3
3450 reflections(Δ/σ)max = 0.002
182 parametersΔρmax = 0.71 e Å3
0 restraintsΔρmin = −0.59 e Å3
Experimental. 1H NMR (δ p.p.m., CDCl3, 400 Hz): 8.59 (s, 1H), 7.70 (dd, J =8.56 and 1.72 Hz, 1H), 7.46-7.62 (m, 3H), 7.36 (d, J =8.88 Hz, 1H), 6.16-7.22 (m, 1H), 3.11 (s, 3H).
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2sigma(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
I10.171392 (16)1.149394 (16)1.025925 (12)0.03179 (6)
S10.78329 (6)0.70139 (6)0.61226 (5)0.02565 (10)
F10.44813 (19)0.69674 (18)0.05731 (12)0.0428 (3)
O10.29753 (17)0.86217 (16)0.49979 (13)0.0257 (3)
O20.81435 (19)0.83024 (18)0.67958 (15)0.0322 (3)
C10.5521 (2)0.7849 (2)0.59123 (18)0.0236 (4)
C20.4042 (2)0.8963 (2)0.67518 (18)0.0229 (3)
C30.3844 (2)0.9583 (2)0.79446 (18)0.0245 (4)
H30.48510.93120.83930.029*
C40.2108 (2)1.0612 (2)0.84450 (18)0.0252 (4)
C50.0602 (3)1.1041 (2)0.77957 (19)0.0279 (4)
H5−0.05601.17530.81730.033*
C60.0793 (3)1.0437 (2)0.6614 (2)0.0280 (4)
H6−0.02091.07180.61580.034*
C70.2528 (2)0.9398 (2)0.61297 (18)0.0240 (4)
C80.4815 (2)0.7686 (2)0.48808 (18)0.0239 (4)
C90.5539 (2)0.6727 (2)0.37323 (18)0.0246 (4)
C100.7027 (3)0.5184 (2)0.36961 (19)0.0284 (4)
H100.76110.47570.44220.034*
C110.7657 (3)0.4272 (3)0.2604 (2)0.0298 (4)
H110.86800.32280.25830.036*
C120.6806 (3)0.4872 (3)0.1544 (2)0.0310 (4)
H120.72230.42500.07940.037*
C140.4675 (3)0.7348 (2)0.26611 (18)0.0259 (4)
H140.36610.83960.26660.031*
C130.5339 (3)0.6395 (3)0.16068 (19)0.0296 (4)
C150.7795 (3)0.5423 (3)0.7268 (2)0.0399 (5)
H15A0.89900.48630.75540.060*
H15B0.74830.45870.68980.060*
H15C0.68930.59490.79760.060*
U11U22U33U12U13U23
I10.02741 (8)0.03722 (9)0.02882 (8)−0.01142 (6)0.00213 (5)−0.00751 (6)
S10.01711 (19)0.0255 (2)0.0331 (2)−0.00688 (17)−0.00367 (17)−0.00041 (18)
F10.0462 (8)0.0463 (8)0.0316 (7)−0.0101 (6)−0.0147 (6)−0.0038 (6)
O10.0192 (6)0.0277 (7)0.0269 (7)−0.0050 (5)−0.0048 (5)−0.0025 (5)
O20.0279 (7)0.0310 (7)0.0421 (8)−0.0142 (6)−0.0108 (6)0.0011 (6)
C10.0189 (8)0.0222 (8)0.0287 (9)−0.0072 (7)−0.0034 (7)0.0005 (7)
C20.0187 (8)0.0212 (8)0.0283 (9)−0.0078 (7)−0.0032 (7)0.0020 (7)
C30.0205 (8)0.0259 (9)0.0272 (9)−0.0089 (7)−0.0043 (7)0.0010 (7)
C40.0232 (8)0.0245 (9)0.0279 (9)−0.0100 (7)−0.0014 (7)−0.0001 (7)
C50.0204 (8)0.0254 (9)0.0341 (10)−0.0059 (7)−0.0007 (7)−0.0007 (8)
C60.0184 (8)0.0292 (9)0.0340 (10)−0.0059 (7)−0.0063 (7)0.0000 (8)
C70.0218 (8)0.0235 (8)0.0254 (9)−0.0074 (7)−0.0045 (7)0.0004 (7)
C80.0181 (8)0.0215 (8)0.0295 (9)−0.0060 (7)−0.0019 (7)0.0019 (7)
C90.0228 (8)0.0258 (9)0.0280 (9)−0.0127 (7)−0.0025 (7)−0.0013 (7)
C100.0248 (9)0.0283 (9)0.0305 (10)−0.0085 (7)−0.0042 (7)−0.0010 (8)
C110.0225 (9)0.0270 (9)0.0363 (11)−0.0066 (7)−0.0002 (8)−0.0030 (8)
C120.0284 (9)0.0331 (10)0.0318 (10)−0.0128 (8)0.0008 (8)−0.0076 (8)
C140.0224 (8)0.0254 (9)0.0307 (9)−0.0101 (7)−0.0043 (7)0.0009 (7)
C130.0291 (9)0.0342 (10)0.0283 (10)−0.0148 (8)−0.0061 (8)0.0000 (8)
C150.0357 (11)0.0310 (11)0.0560 (14)−0.0147 (9)−0.0186 (10)0.0156 (10)
I1—C42.0937 (19)C6—C71.385 (3)
I1—O2i3.2282 (16)C6—H60.9500
S1—O21.4906 (15)C8—C91.460 (3)
S1—C11.7660 (18)C9—C101.396 (3)
S1—C151.794 (2)C9—C141.402 (3)
F1—C131.360 (2)C10—C111.386 (3)
O1—C71.371 (2)C10—H100.9500
O1—C81.380 (2)C11—C121.385 (3)
C1—C81.364 (3)C11—H110.9500
C1—C21.447 (2)C12—C131.376 (3)
C2—C71.392 (3)C12—H120.9500
C2—C31.397 (3)C14—C131.370 (3)
C3—C41.389 (2)C14—H140.9500
C3—H30.9500C15—H15A0.9800
C4—C51.404 (3)C15—H15B0.9800
C5—C61.382 (3)C15—H15C0.9800
C5—H50.9500
C4—I1—O2i162.99 (6)C1—C8—C9135.08 (17)
O2—S1—C1107.27 (8)O1—C8—C9114.36 (16)
O2—S1—C15105.59 (11)C10—C9—C14119.72 (18)
C1—S1—C1597.77 (10)C10—C9—C8121.22 (18)
C7—O1—C8106.51 (14)C14—C9—C8119.02 (17)
C8—C1—C2107.22 (16)C11—C10—C9120.19 (19)
C8—C1—S1126.32 (14)C11—C10—H10119.9
C2—C1—S1126.23 (14)C9—C10—H10119.9
C7—C2—C3119.44 (16)C12—C11—C10120.41 (19)
C7—C2—C1104.72 (16)C12—C11—H11119.8
C3—C2—C1135.82 (17)C10—C11—H11119.8
C4—C3—C2116.96 (17)C13—C12—C11118.20 (18)
C4—C3—H3121.5C13—C12—H12120.9
C2—C3—H3121.5C11—C12—H12120.9
C3—C4—C5122.53 (18)C13—C14—C9117.96 (18)
C3—C4—I1118.63 (14)C13—C14—H14121.0
C5—C4—I1118.81 (13)C9—C14—H14121.0
C6—C5—C4120.71 (17)F1—C13—C14118.31 (18)
C6—C5—H5119.6F1—C13—C12118.15 (18)
C4—C5—H5119.6C14—C13—C12123.5 (2)
C5—C6—C7116.21 (18)S1—C15—H15A109.5
C5—C6—H6121.9S1—C15—H15B109.5
C7—C6—H6121.9H15A—C15—H15B109.5
O1—C7—C6124.79 (17)S1—C15—H15C109.5
O1—C7—C2111.03 (15)H15A—C15—H15C109.5
C6—C7—C2124.15 (18)H15B—C15—H15C109.5
C1—C8—O1110.51 (16)
O2—S1—C1—C8141.12 (17)C3—C2—C7—C60.5 (3)
C15—S1—C1—C8−109.83 (19)C1—C2—C7—C6178.84 (18)
O2—S1—C1—C2−32.64 (19)C2—C1—C8—O10.0 (2)
C15—S1—C1—C276.41 (18)S1—C1—C8—O1−174.78 (13)
C8—C1—C2—C7−0.4 (2)C2—C1—C8—C9−177.5 (2)
S1—C1—C2—C7174.33 (15)S1—C1—C8—C97.7 (3)
C8—C1—C2—C3177.6 (2)C7—O1—C8—C10.5 (2)
S1—C1—C2—C3−7.7 (3)C7—O1—C8—C9178.56 (16)
C7—C2—C3—C40.2 (3)C1—C8—C9—C1029.0 (3)
C1—C2—C3—C4−177.6 (2)O1—C8—C9—C10−148.40 (17)
C2—C3—C4—C5−0.6 (3)C1—C8—C9—C14−153.2 (2)
C2—C3—C4—I1177.44 (13)O1—C8—C9—C1429.3 (2)
O2i—I1—C4—C3−46.0 (3)C14—C9—C10—C110.4 (3)
O2i—I1—C4—C5132.10 (18)C8—C9—C10—C11178.10 (18)
C3—C4—C5—C60.3 (3)C9—C10—C11—C12−0.7 (3)
I1—C4—C5—C6−177.70 (15)C10—C11—C12—C130.5 (3)
C4—C5—C6—C70.3 (3)C10—C9—C14—C130.1 (3)
C8—O1—C7—C6−178.87 (18)C8—C9—C14—C13−177.66 (17)
C8—O1—C7—C2−0.8 (2)C9—C14—C13—F1178.38 (17)
C5—C6—C7—O1177.14 (18)C9—C14—C13—C12−0.3 (3)
C5—C6—C7—C2−0.7 (3)C11—C12—C13—F1−178.69 (18)
C3—C2—C7—O1−177.65 (16)C11—C12—C13—C140.0 (3)
C1—C2—C7—O10.7 (2)
D—H···AD—HH···AD···AD—H···A
C6—H6···O1ii0.952.573.520 (2)177
C11—H11···O2iii0.952.553.372 (2)145
Table 1

Hydrogen-bond geometry (, )

DHA DHHA D A DHA
C6H6O1i 0.952.573.520(2)177
C11H11O2ii 0.952.553.372(2)145

Symmetry codes: (i) ; (ii) .

  3 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  An overview of halogen bonding.

Authors:  Peter Politzer; Pat Lane; Monica C Concha; Yuguang Ma; Jane S Murray
Journal:  J Mol Model       Date:  2006-09-30       Impact factor: 1.810

3.  Crystal structure of 5-chloro-2-(3-fluoro-phen-yl)-3-methyl-sulfinyl-1-benzo-furan.

Authors:  Hong Dae Choi; Uk Lee
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2014-08-09
  3 in total

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