Literature DB >> 25484803

Crystal structure of 2,6-bis-(2,5-di-meth-oxy-phen-yl)-3,5-di-methyl-piperidin-4-one.

Dong Ho Park1, V Ramkumar2, P Parthiban3.   

Abstract

In the title mol-ecule, C23H29NO5, the central piperidine ring has a chair conformation. The planes of the two benzene rings are inclined each to other at 61.7 (1)°. The crystal packing exhibits no directional inter-actions only van der Waals contacts.

Entities:  

Keywords:  Mannich base; chair conformation; crystal structure; piperidin-4-one

Year:  2014        PMID: 25484803      PMCID: PMC4257243          DOI: 10.1107/S1600536814022041

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the synthesis, stereochemistry and biological actions of piperidin-4-ones, see: Sahu et al. (2013 ▶); Parthiban et al. (2011 ▶). For a related crystal structure, see: Parthiban et al. (2008 ▶).

Experimental

Crystal data

C23H29NO5 M = 399.47 Monoclinic, a = 11.1358 (7) Å b = 9.4756 (5) Å c = 20.4541 (11) Å β = 92.271 (2)° V = 2156.6 (2) Å3 Z = 4 Mo Kα radiation μ = 0.09 mm−1 T = 298 K 0.25 × 0.20 × 0.15 mm

Data collection

Bruker APEXII CCD area-detector diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2004 ▶) T min = 0.979, T max = 0.987 11151 measured reflections 3536 independent reflections 2262 reflections with I > 2σ(I) R int = 0.029

Refinement

R[F 2 > 2σ(F 2)] = 0.046 wR(F 2) = 0.116 S = 0.98 3536 reflections 272 parameters H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.17 e Å−3 Δρmin = −0.18 e Å−3

Data collection: APEX2 (Bruker, 2004 ▶); cell refinement: APEX2 and SAINT (Bruker, 2004 ▶); data reduction: SAINT and XPREP (Bruker, 2004 ▶); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 for Windows (Farrugia, 2012 ▶); software used to prepare material for publication: SHELXTL (Sheldrick, 2008 ▶). Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536814022041/cv5470sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536814022041/cv5470Isup2.hkl Click here for additional data file. Supporting information file. DOI: 10.1107/S1600536814022041/cv5470Isup3.cml Click here for additional data file. . DOI: 10.1107/S1600536814022041/cv5470fig1.tif View of (I) showing the atomic numbering and 30% probability displacement ellipsoids. CCDC reference: 1027842 Additional supporting information: crystallographic information; 3D view; checkCIF report
C23H29NO5Z = 4
Mr = 399.47F(000) = 856
Monoclinic, P21/cDx = 1.230 Mg m3
a = 11.1358 (7) ÅMo Kα radiation, λ = 0.71073 Å
b = 9.4756 (5) ŵ = 0.09 mm1
c = 20.4541 (11) ÅT = 298 K
β = 92.271 (2)°Block, yellow
V = 2156.6 (2) Å30.25 × 0.20 × 0.15 mm
Bruker APEXII CCD area-detector diffractometer2262 reflections with I > 2σ(I)
phi and ω scansRint = 0.029
Absorption correction: multi-scan (SADABS; Bruker, 2004)θmax = 25.0°, θmin = 2.4°
Tmin = 0.979, Tmax = 0.987h = −12→12
11151 measured reflectionsk = −11→10
3536 independent reflectionsl = −20→24
Refinement on F20 restraints
Least-squares matrix: fullHydrogen site location: mixed
R[F2 > 2σ(F2)] = 0.046H atoms treated by a mixture of independent and constrained refinement
wR(F2) = 0.116w = 1/[σ2(Fo2) + (0.0405P)2 + 0.9547P] where P = (Fo2 + 2Fc2)/3
S = 0.98(Δ/σ)max < 0.001
3536 reflectionsΔρmax = 0.17 e Å3
272 parametersΔρmin = −0.18 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
xyzUiso*/Ueq
C10.54320 (17)0.4952 (2)0.14728 (9)0.0380 (5)
H10.54450.39180.14680.046*
C20.59048 (18)0.5485 (2)0.21515 (10)0.0439 (5)
H20.58760.65190.21470.053*
C30.50346 (19)0.4971 (2)0.26472 (10)0.0447 (6)
C40.37508 (18)0.5434 (3)0.25295 (10)0.0465 (6)
H40.37370.64690.25260.056*
C50.33417 (17)0.4916 (2)0.18398 (9)0.0413 (5)
H50.33430.38820.18340.050*
C60.61644 (17)0.5504 (2)0.09201 (9)0.0369 (5)
C70.6022 (2)0.6895 (2)0.07205 (10)0.0461 (6)
H70.55140.74840.09460.055*
C80.6620 (2)0.7426 (2)0.01924 (11)0.0510 (6)
C90.7397 (2)0.6581 (3)−0.01319 (10)0.0520 (6)
H90.78070.6936−0.04840.062*
C100.7570 (2)0.5200 (3)0.00665 (10)0.0495 (6)
H100.81060.4631−0.01500.059*
C110.69529 (18)0.4653 (2)0.05833 (9)0.0404 (5)
C120.6457 (4)0.9225 (3)−0.06178 (14)0.1112 (13)
H12A0.72850.9324−0.07250.167*
H12B0.60531.0112−0.06810.167*
H12C0.60800.8525−0.08960.167*
C130.7419 (4)0.2273 (3)0.03408 (15)0.1146 (14)
H13A0.69130.2362−0.00480.172*
H13B0.73290.13470.05230.172*
H13C0.82420.24160.02330.172*
C140.7187 (2)0.5047 (3)0.23158 (12)0.0684 (8)
H14A0.73900.52820.27630.103*
H14B0.77180.55330.20340.103*
H14C0.72660.40470.22550.103*
C150.2921 (2)0.4933 (3)0.30574 (12)0.0722 (8)
H15A0.28470.39240.30370.108*
H15B0.21430.53550.29880.108*
H15C0.32510.52030.34800.108*
C160.20999 (18)0.5443 (2)0.16386 (10)0.0425 (5)
C170.10969 (19)0.4552 (3)0.16077 (11)0.0487 (6)
C180.0001 (2)0.5069 (3)0.13831 (12)0.0595 (7)
H18−0.06580.44660.13530.071*
C19−0.0138 (2)0.6459 (3)0.12020 (12)0.0610 (7)
H19−0.08860.67940.10550.073*
C200.0835 (2)0.7349 (3)0.12398 (11)0.0534 (6)
C210.1949 (2)0.6839 (3)0.14593 (10)0.0480 (6)
H210.26040.74480.14860.058*
C220.0276 (3)0.2382 (4)0.19599 (19)0.1093 (13)
H22A−0.01500.28810.22870.164*
H22B0.05360.14840.21310.164*
H22C−0.02440.22400.15800.164*
C23−0.0296 (3)0.9292 (4)0.08139 (18)0.1084 (12)
H23A−0.05390.87720.04280.163*
H23B−0.02001.02700.07040.163*
H23C−0.08970.92010.11350.163*
N10.41929 (15)0.5441 (2)0.13674 (9)0.0418 (5)
O10.6391 (2)0.88138 (18)0.00307 (9)0.0849 (6)
O20.70918 (15)0.32842 (17)0.07975 (7)0.0610 (5)
O30.53408 (14)0.4179 (2)0.30899 (8)0.0667 (5)
O40.12791 (14)0.31712 (18)0.17881 (9)0.0684 (5)
O50.08013 (16)0.8756 (2)0.10695 (10)0.0790 (6)
H1N0.3918 (19)0.522 (2)0.0956 (11)0.054 (7)*
U11U22U33U12U13U23
C10.0316 (12)0.0430 (13)0.0398 (12)−0.0014 (10)0.0056 (9)−0.0003 (9)
C20.0343 (13)0.0565 (14)0.0410 (12)−0.0045 (11)0.0012 (9)0.0011 (10)
C30.0425 (14)0.0560 (15)0.0355 (12)−0.0051 (11)0.0007 (10)−0.0054 (11)
C40.0396 (14)0.0601 (15)0.0405 (12)0.0024 (11)0.0086 (10)−0.0017 (11)
C50.0325 (13)0.0491 (14)0.0428 (12)−0.0005 (10)0.0065 (9)−0.0020 (10)
C60.0293 (12)0.0436 (13)0.0378 (11)−0.0002 (10)0.0020 (9)−0.0019 (9)
C70.0478 (14)0.0469 (15)0.0442 (13)0.0044 (11)0.0081 (10)−0.0026 (10)
C80.0621 (16)0.0460 (15)0.0452 (13)−0.0051 (13)0.0062 (12)0.0016 (11)
C90.0586 (16)0.0618 (17)0.0364 (12)−0.0123 (13)0.0106 (11)0.0012 (11)
C100.0435 (14)0.0636 (17)0.0422 (13)0.0039 (12)0.0122 (10)−0.0060 (11)
C110.0377 (13)0.0461 (14)0.0374 (11)0.0030 (11)0.0028 (10)−0.0005 (10)
C120.191 (4)0.077 (2)0.065 (2)0.003 (2)0.001 (2)0.0232 (16)
C130.212 (4)0.059 (2)0.075 (2)0.041 (2)0.034 (2)−0.0018 (16)
C140.0398 (15)0.111 (2)0.0547 (15)−0.0071 (15)−0.0020 (11)0.0093 (15)
C150.0505 (16)0.117 (2)0.0500 (15)0.0073 (16)0.0181 (12)0.0062 (15)
C160.0325 (13)0.0549 (15)0.0407 (12)0.0019 (11)0.0079 (9)−0.0023 (10)
C170.0326 (14)0.0611 (17)0.0530 (14)0.0022 (12)0.0087 (10)−0.0008 (12)
C180.0338 (15)0.0736 (19)0.0712 (17)−0.0039 (13)0.0049 (12)0.0005 (14)
C190.0351 (15)0.083 (2)0.0648 (17)0.0121 (15)0.0022 (12)0.0024 (14)
C200.0474 (16)0.0579 (17)0.0556 (15)0.0122 (14)0.0087 (12)0.0018 (12)
C210.0368 (14)0.0584 (16)0.0494 (13)0.0013 (12)0.0085 (10)−0.0027 (11)
C220.065 (2)0.098 (3)0.165 (3)−0.0243 (19)0.002 (2)0.051 (2)
C230.096 (3)0.102 (3)0.128 (3)0.043 (2)0.012 (2)0.030 (2)
N10.0293 (10)0.0615 (13)0.0347 (10)0.0010 (9)0.0031 (8)−0.0022 (9)
O10.1432 (19)0.0502 (12)0.0627 (12)0.0013 (11)0.0232 (11)0.0144 (9)
O20.0819 (12)0.0503 (10)0.0522 (10)0.0217 (9)0.0209 (8)0.0043 (8)
O30.0544 (11)0.0958 (14)0.0499 (10)0.0008 (10)0.0020 (8)0.0231 (9)
O40.0420 (10)0.0605 (12)0.1031 (14)−0.0078 (9)0.0086 (9)0.0132 (10)
O50.0660 (13)0.0680 (13)0.1032 (15)0.0206 (10)0.0044 (10)0.0128 (11)
C1—N11.463 (2)C13—O21.396 (3)
C1—C61.513 (3)C13—H13A0.9600
C1—C21.550 (3)C13—H13B0.9600
C1—H10.9800C13—H13C0.9600
C2—C141.511 (3)C14—H14A0.9600
C2—C31.511 (3)C14—H14B0.9600
C2—H20.9800C14—H14C0.9600
C3—O31.215 (2)C15—H15A0.9600
C3—C41.506 (3)C15—H15B0.9600
C4—C151.525 (3)C15—H15C0.9600
C4—C51.545 (3)C16—C211.381 (3)
C4—H40.9800C16—C171.399 (3)
C5—N11.467 (2)C17—O41.373 (3)
C5—C161.512 (3)C17—C181.377 (3)
C5—H50.9800C18—C191.376 (3)
C6—C71.388 (3)C18—H180.9300
C6—C111.394 (3)C19—C201.372 (3)
C7—C81.386 (3)C19—H190.9300
C7—H70.9300C20—O51.378 (3)
C8—C91.369 (3)C20—C211.389 (3)
C8—O11.378 (3)C21—H210.9300
C9—C101.381 (3)C22—O41.400 (3)
C9—H90.9300C22—H22A0.9600
C10—C111.384 (3)C22—H22B0.9600
C10—H100.9300C22—H22C0.9600
C11—O21.376 (2)C23—O51.405 (3)
C12—O11.387 (3)C23—H23A0.9600
C12—H12A0.9600C23—H23B0.9600
C12—H12B0.9600C23—H23C0.9600
C12—H12C0.9600N1—H1N0.91 (2)
N1—C1—C6108.28 (16)H13A—C13—H13B109.5
N1—C1—C2108.30 (16)O2—C13—H13C109.5
C6—C1—C2112.50 (16)H13A—C13—H13C109.5
N1—C1—H1109.2H13B—C13—H13C109.5
C6—C1—H1109.2C2—C14—H14A109.5
C2—C1—H1109.2C2—C14—H14B109.5
C14—C2—C3112.79 (18)H14A—C14—H14B109.5
C14—C2—C1113.20 (18)C2—C14—H14C109.5
C3—C2—C1106.98 (16)H14A—C14—H14C109.5
C14—C2—H2107.9H14B—C14—H14C109.5
C3—C2—H2107.9C4—C15—H15A109.5
C1—C2—H2107.9C4—C15—H15B109.5
O3—C3—C4122.4 (2)H15A—C15—H15B109.5
O3—C3—C2122.1 (2)C4—C15—H15C109.5
C4—C3—C2115.40 (18)H15A—C15—H15C109.5
C3—C4—C15113.20 (19)H15B—C15—H15C109.5
C3—C4—C5107.28 (16)C21—C16—C17118.5 (2)
C15—C4—C5112.49 (19)C21—C16—C5119.26 (19)
C3—C4—H4107.9C17—C16—C5122.2 (2)
C15—C4—H4107.9O4—C17—C18123.2 (2)
C5—C4—H4107.9O4—C17—C16117.0 (2)
N1—C5—C16108.48 (17)C18—C17—C16119.8 (2)
N1—C5—C4108.59 (17)C17—C18—C19121.3 (2)
C16—C5—C4112.15 (17)C17—C18—H18119.4
N1—C5—H5109.2C19—C18—H18119.4
C16—C5—H5109.2C20—C19—C18119.5 (2)
C4—C5—H5109.2C20—C19—H19120.2
C7—C6—C11118.11 (19)C18—C19—H19120.2
C7—C6—C1119.29 (18)C19—C20—O5124.5 (2)
C11—C6—C1122.56 (19)C19—C20—C21119.8 (2)
C8—C7—C6121.4 (2)O5—C20—C21115.7 (2)
C8—C7—H7119.3C16—C21—C20121.1 (2)
C6—C7—H7119.3C16—C21—H21119.4
C9—C8—O1123.8 (2)C20—C21—H21119.4
C9—C8—C7119.9 (2)O4—C22—H22A109.5
O1—C8—C7116.3 (2)O4—C22—H22B109.5
C8—C9—C10119.6 (2)H22A—C22—H22B109.5
C8—C9—H9120.2O4—C22—H22C109.5
C10—C9—H9120.2H22A—C22—H22C109.5
C11—C10—C9120.8 (2)H22B—C22—H22C109.5
C11—C10—H10119.6O5—C23—H23A109.5
C9—C10—H10119.6O5—C23—H23B109.5
O2—C11—C10122.92 (19)H23A—C23—H23B109.5
O2—C11—C6116.93 (18)O5—C23—H23C109.5
C10—C11—C6120.1 (2)H23A—C23—H23C109.5
O1—C12—H12A109.5H23B—C23—H23C109.5
O1—C12—H12B109.5C1—N1—C5115.22 (16)
H12A—C12—H12B109.5C1—N1—H1N110.3 (13)
O1—C12—H12C109.5C5—N1—H1N109.3 (13)
H12A—C12—H12C109.5C8—O1—C12118.8 (2)
H12B—C12—H12C109.5C11—O2—C13117.55 (19)
O2—C13—H13A109.5C17—O4—C22117.8 (2)
O2—C13—H13B109.5C20—O5—C23117.3 (2)
N1—C1—C2—C14−179.85 (19)C7—C6—C11—C100.1 (3)
C6—C1—C2—C14−60.2 (2)C1—C6—C11—C10177.74 (19)
N1—C1—C2—C355.3 (2)N1—C5—C16—C21−45.6 (3)
C6—C1—C2—C3174.94 (18)C4—C5—C16—C2174.4 (2)
C14—C2—C3—O3−6.6 (3)N1—C5—C16—C17132.4 (2)
C1—C2—C3—O3118.5 (2)C4—C5—C16—C17−107.7 (2)
C14—C2—C3—C4177.1 (2)C21—C16—C17—O4179.87 (19)
C1—C2—C3—C4−57.8 (2)C5—C16—C17—O41.9 (3)
O3—C3—C4—C155.9 (3)C21—C16—C17—C181.9 (3)
C2—C3—C4—C15−177.8 (2)C5—C16—C17—C18−176.0 (2)
O3—C3—C4—C5−118.8 (2)O4—C17—C18—C19−179.4 (2)
C2—C3—C4—C557.5 (2)C16—C17—C18—C19−1.6 (4)
C3—C4—C5—N1−54.6 (2)C17—C18—C19—C200.6 (4)
C15—C4—C5—N1−179.68 (19)C18—C19—C20—O5179.7 (2)
C3—C4—C5—C16−174.42 (18)C18—C19—C20—C210.1 (4)
C15—C4—C5—C1660.5 (3)C17—C16—C21—C20−1.3 (3)
N1—C1—C6—C744.2 (2)C5—C16—C21—C20176.73 (19)
C2—C1—C6—C7−75.5 (2)C19—C20—C21—C160.3 (3)
N1—C1—C6—C11−133.4 (2)O5—C20—C21—C16−179.4 (2)
C2—C1—C6—C11106.9 (2)C6—C1—N1—C5176.09 (17)
C11—C6—C7—C81.5 (3)C2—C1—N1—C5−61.6 (2)
C1—C6—C7—C8−176.22 (19)C16—C5—N1—C1−176.60 (17)
C6—C7—C8—C9−1.9 (3)C4—C5—N1—C161.3 (2)
C6—C7—C8—O1178.8 (2)C9—C8—O1—C1230.9 (4)
O1—C8—C9—C10179.9 (2)C7—C8—O1—C12−149.8 (3)
C7—C8—C9—C100.7 (3)C10—C11—O2—C13−28.2 (3)
C8—C9—C10—C110.9 (3)C6—C11—O2—C13153.0 (3)
C9—C10—C11—O2179.8 (2)C18—C17—O4—C22−21.9 (4)
C9—C10—C11—C6−1.3 (3)C16—C17—O4—C22160.3 (2)
C7—C6—C11—O2179.04 (18)C19—C20—O5—C23−2.8 (4)
C1—C6—C11—O2−3.3 (3)C21—C20—O5—C23176.8 (2)
  3 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

Review 2.  Piperidin-4-one: the potential pharmacophore.

Authors:  Shashi Kant Sahu; Bidhyut Kumar Dubey; Avinash C Tripathi; Mary Koshy; Shailendra K Saraf
Journal:  Mini Rev Med Chem       Date:  2013-04       Impact factor: 3.862

3.  r-2,c-6-Bis(3-methoxy-phen-yl)-t-3,t-5-dimethyl-piperidin-4-one.

Authors:  P Parthiban; V Ramkumar; Nanjundan Ashok Kumar; Jong Su Kim; Yeon Tae Jeong
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2008-07-31
  3 in total

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