Literature DB >> 25484730

Crystal structure of (NH4)2[Fe(II) 5(HPO3)6], a new open-framework phosphite.

Teresa Berrocal1, Jose Luis Mesa1, Edurne Larrea2, Juan Manuel Arrieta1.   

Abstract

Di-ammonium hexa-phosphito-penta-ferrate(II), (NH4)2[Fe5(HPO3)6], was synthesized under mild hydro-thermal conditions and autogeneous pressure, yielding twinned crystals. The crystal structure exhibits an [Fe(II) 5(HPO3)6](2-) open framework with NH4 (+) groups as counter-cations. The anionic skeleton is based on (001) sheets of [FeO6] octa-hedra (one with point-group symmetry 3.. and one with .2.) linked along [001] through [HPO3](2-) oxoanions. Each sheet is constructed from 12-membered rings of edge-sharing [FeO6] octa-hedra, giving rise to channels with a radius of ca 3.1 Å in which the disordered NH4 (+) cations are located. The IR spectrum shows vibrational bands typical for phosphite and ammonium groups.

Entities:  

Keywords:  IR spectroscopy; crystal structure; iron phosphite; mild hydro­thermal synthesis

Year:  2014        PMID: 25484730      PMCID: PMC4257287          DOI: 10.1107/S1600536814021783

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Chemical context

Research in the area of solids exhibiting open-framework structures continues to be exciting because of their numerous potential applications (Barrer, 1982 ▶; Hagrman et al., 1999 ▶). Prior to the early 1980s when nanoporous aluminium phosphates were first reported by Flanigen and co-workers, aluminosilicate-based zeolites (Wilson et al., 1982 ▶) and closely related systems represented the predominant class of mat­erials with open-framework structures. In the me­antime, a plethora of activities and efforts have been undertaken for the synthesis of numerous other compounds with open-framework structures of different dimensionalities (Yu & Xu, 2006 ▶). Recently a new ammonium iron phosphite, (NH4)[Fe(HPO3)2], has been reported (Hamchaoui et al., 2013 ▶) that consists of [FeIII(HPO3)2]− layers formed by [FeO6] octa­hedra inter­connected by [HPO3]2− oxoanions. The ammonium counter-cations are located in the inter­layer space. Here we report on synthesis and the crystal structure of another ammonium iron phosphite, (NH4)2[Fe5(HPO3)6], in which iron exhibits oxidation state +II.

Structural commentary

Tha asymmetric unit of (NH4)2[Fe5(HPO3)6] is displayed in Fig. 1 ▶. The crystal structure of the title compound contains [FeO6] octa­hedra linked via edge-sharing into sheets parallel to (001). These sheets consist of 12-membered rings whereby each ring is formed by six [Fe(1)O6] octa­hedra and six [Fe(2)O6] octa­hedra. The iron(II) ions occupy two different special positions (6f and 4d) with site symmetries of .2. and 3.., respectively. In one of the FeO6 octa­hedra (Fe1), the Fe—O bond lengths range from 2.030 (2) to 2.217 (3) Å while in the [Fe(2)O6] octa­hedron a more uniform bond-length distribution from 2.138 (3) to 2.140 (3) Å is observed. The bond angles of the two [FeO6] octa­hedra range between 76.48 (10) and 103.18 (9)° for the cis- and between 163.65 (12) and 178.24 (17)° for the trans-angles.
Figure 1

The asymmetric unit of (NH4)2[FeII 5(HPO3)6], with displacement parameters drawn at the 50% probability level.

The iron oxide sheets are linked through phosphite groups in which six anions share the most inter­ior oxygen atoms of each ring (Fig. 2 ▶), forming 12-membered channels along [001] with a radius of about 3.1 Å. The phospho­rus(III) atom of the complex oxoanion is located on a general position of this space group. The P—O bond lengths of the anion range from 1.514 (3) to 1.538 (3) Å, and the P—H distance is 1.28 (5) Å, with O—P—O bond angles from 110.28 (17) to 114.29 (17)°.
Figure 2

The crystal structure of (NH4)2[FeII 5(HPO3)6] in polyhedral representation, in a projection along [001]. Displacement parameters are drawn at the 50% probability level.

Supra­molecular features

The ammonium cations are located in the 12-membered channels of the framework structure. Although no hydrogen atoms of the cations could be located due to the positional disorder, N⋯O contacts of 2.67 (6), 2.85 (7), 2.87 (8) and 2.98 (6) Å between the cations and the O atoms of the anions suggest hydrogen-bonding inter­actions of medium strength. The H atom of the [HPO3]2− anion shows a distance of 2.51 (3) Å to atom O1 [P—H⋯O angle 116.8 (14)°] and seems not to be part of relevant hydrogen-bonding inter­actions.

Synthesis and characterization

(NH4)2[FeII 5(HPO3)6] was synthesized under mild hydro­thermal conditions and autogeneous pressure (10–20 bar at 343 K). The reaction mixture was prepared from 30 ml water, 2 ml of phospho­rous acid, 0.17 mmol of NH4OH and 0.37 mmol of FeCl3. The mixture had a pH value of ≃ 6.0. The reaction mixture was sealed in a polytetra­fluoro­ethyl­ene (PTFE)-lined steel pressure vessel, which was maintained at 343 K for five days. This procedure apparently caused reduction of iron(III) to iron(II) and led to the formation of single crystals of the title compound with a dark-green colour. All crystals appeared to be twinned. The presence of ammonium cations in the title compound was confirmed by infra-red spectroscopy, showing bands at 3190 and 1450 cm−1. Characteristic bands of the phosphite P—H group were also observed at 2510 and 1050 cm−1 (Nakamoto, 1997 ▶).

Refinement

Crystal data, data collection and structure refinement details are summarized in Table 1 ▶. The title crystal was confirmed to be twinned by merohedry using the TwinRotMap option in PLATON (Spek, 2009 ▶). The twin element is a 180°-rotation around the <10> direction, or any other equivalent representations of the coset decomposition of the 6/mmm holohedry under crystal class m1. The twin law (00/00/00) was used during the refinements, and the twin volume of the second component refined to a value of 0.079 (1)%.
Table 1

Experimental details

Crystal data
Chemical formula(NH4)2[Fe5(HPO3)6]
M r 795.20
Crystal system, space groupTrigonal, P c1
Temperature (K)100
a, c ()10.3862(15), 9.2089(14)
V (3)860.3(3)
Z 2
Radiation typeMo K
(mm1)4.78
Crystal size (mm)0.18 0.05 0.02
 
Data collection
DiffractometerAgilent SuperNova (single source at offset)
Absorption correctionGaussian (CrysAlis PRO; Agilent, 2014)
T min, T max 0.566, 0.893
No. of measured, independent and observed [I > 2(I)] reflections6343, 659, 618
R int 0.073
(sin /)max (1)0.649
 
Refinement
R[F 2 > 2(F 2)], wR(F 2), S 0.033, 0.065, 1.17
No. of reflections659
No. of parameters68
No. of restraints15
H-atom treatmentOnly H-atom coordinates refined
max, min (e 3)0.53, 0.76

Computer programs: CrysAlis PRO (Agilent, 2014 ▶), SUPERFLIP (Palatinus Chapuis, 2007 ▶), SHELXL2014 (Sheldrick, 2008 ▶), DIAMOND (Brandenburg, 2010 ▶) and OLEX2 (Dolomanov et al., 2009 ▶).

The hydrogen atom of the phosphite group was located in a difference map and restrained to be equidistant to the three oxygen atoms of the group, and a fixed isotropic displacement parameter with a value equal to 1.2U eq of the parent P atom was assigned. The ammonium cation is equally disordered around a threefold rotation axis along (00z) and was refined with two positions, N1 and N2. The occupancy factors of N1 and N2 were initially freely refined, but since they refined close to the expected value of 1/6, this value was fixed during the last cycles. Because the ellipsoids of these atoms were very elongated, ISOR commands of SHELXL2014 (Sheldrick, 2008 ▶) were used to achieve more regular displacements. This command restrains the U ij components of anisotropically refined atoms to behave approximately isotropically within a standard uncertainty. H atoms belonging to the disordered ammonium atoms were not considered in the final model. Crystal structure: contains datablock(s) global, I, New_Global_Publ_Block. DOI: 10.1107/S1600536814021783/wm5036sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536814021783/wm5036Isup2.hkl CCDC reference: 1027279 Additional supporting information: crystallographic information; 3D view; checkCIF report
(NH4)2[Fe5(HPO3)6]Dx = 3.070 Mg m3
Mr = 795.20Mo Kα radiation, λ = 0.71073 Å
Trigonal, P3c1Cell parameters from 2414 reflections
a = 10.3862 (15) Åθ = 2.3–28.3°
c = 9.2089 (14) ŵ = 4.78 mm1
V = 860.3 (3) Å3T = 100 K
Z = 2Acicular, dark green
F(000) = 7840.18 × 0.05 × 0.02 mm
Agilent SuperNova (single source at offset) diffractometer659 independent reflections
Radiation source: SuperNova (Mo) X-ray Source618 reflections with I > 2σ(I)
Mirror monochromatorRint = 0.073
Detector resolution: 16.2439 pixels mm-1θmax = 27.5°, θmin = 2.2°
ω scansh = −13→11
Absorption correction: gaussian (CrysAlis PRO; Agilent, 2014)k = −10→13
Tmin = 0.566, Tmax = 0.893l = −11→11
6343 measured reflections
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.033Hydrogen site location: difference Fourier map
wR(F2) = 0.065Only H-atom coordinates refined
S = 1.17w = 1/[σ2(Fo2) + (0.0126P)2 + 2.2823P] where P = (Fo2 + 2Fc2)/3
659 reflections(Δ/σ)max < 0.001
68 parametersΔρmax = 0.53 e Å3
15 restraintsΔρmin = −0.76 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/UeqOcc. (<1)
Fe10.61330 (9)0.00000.25000.0209 (2)
Fe20.66670.33330.33453 (10)0.0202 (3)
P10.88002 (13)0.29352 (13)0.09044 (10)0.0224 (3)
H1P1.020 (5)0.343 (3)0.091 (2)0.027*
O20.8512 (3)0.3935 (3)0.1927 (3)0.0234 (7)
O30.8404 (3)0.3102 (4)−0.0665 (3)0.0243 (7)
O10.8063 (4)0.1345 (4)0.1440 (3)0.0284 (8)
N20.970 (5)−0.047 (3)0.059 (2)0.045 (9)0.1667
N11.024 (5)−0.015 (6)0.2033 (17)0.020 (7)0.1667
U11U22U33U12U13U23
Fe10.0286 (4)0.0250 (5)0.0080 (4)0.0125 (2)0.00013 (16)0.0003 (3)
Fe20.0264 (4)0.0264 (4)0.0077 (4)0.01319 (19)0.0000.000
P10.0278 (6)0.0323 (7)0.0066 (4)0.0148 (5)−0.0011 (4)−0.0018 (4)
O20.0265 (17)0.0314 (17)0.0088 (12)0.0119 (14)−0.0013 (11)−0.0049 (12)
O30.0330 (18)0.0366 (18)0.0062 (11)0.0195 (15)−0.0043 (11)−0.0037 (12)
O10.041 (2)0.0311 (18)0.0123 (13)0.0176 (16)−0.0007 (13)−0.0011 (13)
N20.036 (17)0.040 (17)0.051 (11)0.014 (13)−0.015 (15)0.004 (10)
N10.012 (17)0.011 (15)0.030 (8)0.002 (7)0.002 (9)−0.002 (10)
Fe1—O2i2.086 (3)Fe2—O3vii2.140 (3)
Fe1—O2ii2.086 (3)Fe2—O3viii2.140 (3)
Fe1—O3iii2.217 (3)P1—O21.538 (3)
Fe1—O3iv2.217 (3)P1—O31.536 (3)
Fe1—O12.030 (3)P1—O11.514 (3)
Fe1—O1v2.030 (3)O2—Fe1vi2.086 (3)
Fe2—O22.138 (3)O3—Fe1ix2.217 (3)
Fe2—O2ii2.138 (3)O3—Fe2x2.140 (3)
Fe2—O2vi2.138 (3)P1—H1P1.28 (5)
Fe2—O3iii2.140 (3)
O2i—Fe1—O2ii87.23 (17)O2—Fe2—O3vii163.65 (11)
O2ii—Fe1—O3iv102.21 (11)O2—Fe2—O3viii77.08 (11)
O2ii—Fe1—O3iii76.48 (10)O2vi—Fe2—O3vii77.08 (11)
O2i—Fe1—O3iv76.48 (10)O2ii—Fe2—O3viii163.65 (11)
O2i—Fe1—O3iii102.21 (11)O2ii—Fe2—O3iii77.08 (11)
O3iv—Fe1—O3iii178.24 (17)O3iii—Fe2—O3vii103.18 (9)
O1v—Fe1—O2ii165.86 (10)O3iii—Fe2—O3viii103.18 (9)
O1v—Fe1—O2i87.80 (12)O3viii—Fe2—O3vii103.18 (9)
O1—Fe1—O2ii87.80 (12)O3—P1—O2110.28 (17)
O1—Fe1—O2i165.86 (10)O1—P1—O2111.96 (17)
O1v—Fe1—O3iv89.46 (11)O1—P1—O3114.29 (17)
O1—Fe1—O3iii89.46 (11)Fe1vi—O2—Fe2103.34 (12)
O1—Fe1—O3iv91.67 (11)P1—O2—Fe1vi127.30 (17)
O1v—Fe1—O3iii91.67 (11)P1—O2—Fe2128.71 (18)
O1v—Fe1—O199.93 (18)Fe2x—O3—Fe1ix99.01 (10)
O2ii—Fe2—O2vi86.57 (11)P1—O3—Fe1ix124.27 (18)
O2—Fe2—O2vi86.57 (11)P1—O3—Fe2x134.56 (18)
O2—Fe2—O2ii86.57 (11)P1—O1—Fe1133.9 (2)
O2—Fe2—O3iii92.54 (11)O1—P1—H1P106.9 (14)
O2vi—Fe2—O3viii92.54 (11)O2—P1—H1P107.0 (12)
O2ii—Fe2—O3vii92.54 (11)O3—P1—H1P105.9 (12)
O2vi—Fe2—O3iii163.65 (12)
O2—P1—O3—Fe1ix120.4 (2)O3—P1—O1—Fe1−91.5 (3)
O2—P1—O3—Fe2x−39.2 (3)O1—P1—O2—Fe1vi141.7 (2)
O2—P1—O1—Fe134.8 (3)O1—P1—O2—Fe2−27.5 (3)
O3—P1—O2—Fe1vi−89.9 (2)O1—P1—O3—Fe1ix−112.4 (2)
O3—P1—O2—Fe2101.0 (2)O1—P1—O3—Fe2x88.0 (3)
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1.  Crystal structure of K0.75[Fe(II) 3.75Fe(III) 1.25(HPO3)6]·0.5H2O, an open-framework iron phosphite with mixed-valent Fe(II)/Fe(III) ions.

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