Literature DB >> 25484718

Crystal structure of (5R)-5-[(1S)-1,2-di-hydroxy-eth-yl]-4-meth-oxy-3-phenyl-2,5-di-hydro-furan-2-one.

Santosh R Kote1, Shankar R Thopate1, Sushil K Gupta2, Ray J Butcher3.   

Abstract

In the title compound, C13H14O5, the <span class="Chemical">furan ring is essentially planar [maximum deviation = 0.031 (3) Å] with a stereogenic center (R) at the sp (3) hybridized C atom. The C atom bearing the dihy-droxy ethyl group is S. The absolute configuration is based on the precursor in the synthesis. The two O-H groups are in an anti conformation with respect to each other. The mean plane of the furan-one group is twisted by 8.2 (4)° from that of the phenyl ring. In the crystal, mol-ecules are linked by O-H⋯O hydrogen bonds involving furan-one C=O groups and symmetry-related hy-droxy groups, forming a two-dimensional network parallel to (001). Weak C-H⋯O hydrogen bonds are observed within the two-dimensional network.

Entities:  

Keywords:  Crystal structure; crystal structure; hydrogen bonding.; l-ascorbic acid derivative

Year:  2014        PMID: 25484718      PMCID: PMC4257168          DOI: 10.1107/S1600536814021370

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the biological activity of 5,6-O-modified and <span class="Chemical">2,3-di-O-alkyl derivatives of l-ascorbic acid, see: Tanuma et al. (1993 ▶); Gazivoda et al. (2007 ▶); Wittine et al. (2012 ▶); Kote et al. (2014 ▶). For related structures, see: Koo & McDonald (2005 ▶); Tanaka et al. (1986 ▶); Sugimura (1990 ▶). For a description of the Cambridge Structural Database, see: Allen (2002 ▶).

Experimental

Crystal data

C13H14O5 M = 250.24 Monoclinic, a = 7.5110 (5) Å b = 4.9298 (3) Å c = 16.6625 (16) Å β = 93.268 (6)° V = 615.97 (8) Å3 Z = 2 Mo Kα radiation μ = 0.10 mm−1 T = 293 K 0.4 × 0.3 × 0.08 mm

Data collection

Agilent Xcalibur, Ruby, Gemini diffractometer Absorption correction: multi-scan (CrysAlis PRO; Agilent, 2011 ▶) T min = 0.714, T max = 1.000 8346 measured reflections 1243 independent reflections 655 reflections with I > 2σ(I) R int = 0.034

Refinement

R[F 2 > 2σ(F 2)] = 0.059 wR(F 2) = 0.126 S = 1.05 1243 reflections 166 parameters 1 restraint H-atom parameters constrained Δρmax = 0.13 e Å−3 Δρmin = −0.15 e Å−3

Data collection: CrysAlis PRO (Agilent, 2011 ▶); cell refinement: CrysAlis PRO; data reduction: CrysAlis PRO; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL2014/6 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXTL (Sheldrick, 2008 ▶). Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536814021370/lh5729sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536814021370/lh5729Isup2.hkl Click here for additional data file. Supporting information file. DOI: 10.1107/S1600536814021370/lh5729Isup3.cml Click here for additional data file. . DOI: 10.1107/S1600536814021370/lh5729fig1.tif Scheme showing the synthesis of the title compound. Click here for additional data file. . DOI: 10.1107/S1600536814021370/lh5729fig2.tif The mol­ecular structure of (I) showing 50% probability displacement ellipsoids. Click here for additional data file. b . DOI: 10.1107/S1600536814021370/lh5729fig3.tif The mol­ecular packing of the title compound, viewed along the b-axis, showing two-dimensional network parallel to (001). Dashed lines indicate hydrogen bonds. CCDC references: 998610, 1026319 Additional supporting information: crystallographic information; 3D view; checkCIF report
C13H14O5F(000) = 264
Mr = 250.24Dx = 1.349 Mg m3
Monoclinic, P21Mo Kα radiation, λ = 0.71073 Å
a = 7.5110 (5) ÅCell parameters from 613 reflections
b = 4.9298 (3) Åθ = 3.6–28.4°
c = 16.6625 (16) ŵ = 0.10 mm1
β = 93.268 (6)°T = 293 K
V = 615.97 (8) Å3Plate, colorless
Z = 20.4 × 0.3 × 0.08 mm
Agilent Xcalibur, Ruby, Gemini diffractometer1243 independent reflections
Radiation source: Enhance (Mo) X-ray Source655 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.034
Detector resolution: 10.5081 pixels mm-1θmax = 25.3°, θmin = 3.6°
ω scansh = −9→9
Absorption correction: multi-scan (CrysAlis PRO; Agilent, 2011)k = 0→5
Tmin = 0.714, Tmax = 1.000l = 0→19
8346 measured reflections
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.059Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.126H-atom parameters constrained
S = 1.05w = 1/[σ2(Fo2) + (0.039P)2] where P = (Fo2 + 2Fc2)/3
1243 reflections(Δ/σ)max < 0.001
166 parametersΔρmax = 0.13 e Å3
1 restraintΔρmin = −0.15 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
xyzUiso*/Ueq
O11.1330 (5)0.1548 (13)0.2979 (3)0.0999 (17)
O20.9642 (4)0.4569 (9)0.3574 (3)0.0705 (13)
O30.5525 (5)0.4727 (10)0.2375 (3)0.0830 (14)
O40.6722 (4)0.1838 (8)0.4222 (3)0.0727 (13)
H40.56830.13860.42720.109*
O50.6695 (4)0.5242 (11)0.5641 (2)0.0776 (14)
H50.71730.58750.60540.116*
C10.8238 (8)0.0846 (12)0.1705 (4)0.0609 (16)
C20.6797 (10)0.0982 (15)0.1143 (5)0.090 (2)
H2A0.58880.22150.12250.108*
C30.6670 (12)−0.0633 (19)0.0476 (5)0.107 (3)
H3A0.5686−0.04820.01140.128*
C40.7970 (13)−0.2454 (16)0.0338 (5)0.098 (3)
H4A0.7883−0.3561−0.01140.117*
C50.9404 (11)−0.2637 (16)0.0873 (6)0.100 (3)
H5A1.0301−0.38820.07830.120*
C60.9552 (9)−0.1003 (15)0.1549 (5)0.085 (2)
H6A1.0551−0.11540.19030.102*
C70.8339 (7)0.2571 (12)0.2420 (4)0.0565 (17)
C80.9895 (8)0.2716 (15)0.2967 (4)0.071 (2)
C90.7819 (6)0.5560 (13)0.3479 (4)0.0609 (16)
H90.78140.75410.34280.073*
C100.7144 (7)0.4319 (12)0.2723 (4)0.0602 (17)
C110.6847 (7)0.4704 (14)0.4227 (4)0.0584 (16)
H11A0.56400.54690.41890.070*
C120.7805 (7)0.5703 (14)0.4989 (4)0.0681 (18)
H12A0.89250.47420.50810.082*
H12B0.80610.76240.49440.082*
C130.4443 (8)0.6955 (16)0.2630 (4)0.094 (2)
H13A0.36700.75540.21860.142*
H13B0.52010.84240.28120.142*
H13C0.37390.63660.30600.142*
U11U22U33U12U13U23
O10.061 (2)0.158 (5)0.081 (4)0.027 (3)0.005 (2)0.004 (3)
O20.054 (2)0.090 (3)0.068 (3)−0.011 (2)0.003 (2)0.000 (3)
O30.071 (2)0.092 (3)0.083 (4)0.024 (3)−0.018 (2)−0.017 (3)
O40.066 (2)0.060 (3)0.094 (4)−0.006 (2)0.016 (2)0.002 (2)
O50.060 (2)0.113 (4)0.061 (3)0.005 (2)0.011 (2)0.006 (3)
C10.069 (4)0.056 (4)0.058 (5)0.000 (3)0.007 (4)0.001 (4)
C20.109 (5)0.084 (6)0.077 (6)0.017 (5)0.000 (5)−0.015 (5)
C30.125 (6)0.104 (7)0.090 (7)0.010 (6)−0.008 (5)−0.019 (6)
C40.148 (7)0.077 (6)0.070 (7)−0.009 (6)0.025 (6)−0.011 (5)
C50.110 (6)0.086 (6)0.107 (8)0.013 (5)0.039 (6)−0.014 (6)
C60.079 (4)0.087 (6)0.091 (6)0.014 (4)0.015 (4)−0.005 (5)
C70.053 (3)0.056 (4)0.061 (5)0.001 (3)0.007 (3)0.007 (4)
C80.063 (4)0.087 (6)0.064 (5)−0.003 (4)0.012 (4)0.004 (4)
C90.056 (3)0.058 (4)0.068 (5)−0.002 (3)−0.001 (3)0.006 (4)
C100.054 (3)0.062 (4)0.063 (5)−0.004 (4)−0.002 (3)0.006 (4)
C110.051 (3)0.056 (4)0.068 (5)−0.005 (3)0.007 (3)0.002 (4)
C120.061 (3)0.077 (4)0.066 (5)−0.009 (3)0.007 (3)−0.002 (4)
C130.077 (4)0.097 (6)0.109 (7)0.025 (5)0.001 (4)−0.004 (5)
O1—C81.221 (7)C4—H4A0.9300
O2—C81.384 (8)C5—C61.384 (10)
O2—C91.454 (6)C5—H5A0.9300
O3—C101.332 (6)C6—H6A0.9300
O3—C131.445 (7)C7—C101.362 (7)
O4—C111.416 (7)C7—C81.442 (8)
O4—H40.8200C9—C101.464 (8)
O5—C121.424 (6)C9—C111.539 (7)
O5—H50.8200C9—H90.9800
C1—C61.379 (8)C11—C121.507 (8)
C1—C21.392 (8)C11—H11A0.9800
C1—C71.462 (8)C12—H12A0.9700
C2—C31.367 (10)C12—H12B0.9700
C2—H2A0.9300C13—H13A0.9600
C3—C41.355 (10)C13—H13B0.9600
C3—H3A0.9300C13—H13C0.9600
C4—C51.362 (9)
C8—O2—C9108.0 (5)O2—C9—C10103.4 (5)
C10—O3—C13120.1 (5)O2—C9—C11107.8 (5)
C11—O4—H4109.5C10—C9—C11115.1 (5)
C12—O5—H5109.5O2—C9—H9110.1
C6—C1—C2116.3 (6)C10—C9—H9110.1
C6—C1—C7122.3 (6)C11—C9—H9110.1
C2—C1—C7121.5 (6)O3—C10—C7122.6 (6)
C3—C2—C1122.3 (7)O3—C10—C9125.1 (5)
C3—C2—H2A118.8C7—C10—C9112.3 (5)
C1—C2—H2A118.8O4—C11—C12111.0 (5)
C4—C3—C2120.4 (8)O4—C11—C9107.7 (5)
C4—C3—H3A119.8C12—C11—C9111.5 (5)
C2—C3—H3A119.8O4—C11—H11A108.8
C3—C4—C5118.9 (8)C12—C11—H11A108.8
C3—C4—H4A120.5C9—C11—H11A108.8
C5—C4—H4A120.5O5—C12—C11108.6 (4)
C4—C5—C6121.2 (7)O5—C12—H12A110.0
C4—C5—H5A119.4C11—C12—H12A110.0
C6—C5—H5A119.4O5—C12—H12B110.0
C1—C6—C5120.8 (7)C11—C12—H12B110.0
C1—C6—H6A119.6H12A—C12—H12B108.4
C5—C6—H6A119.6O3—C13—H13A109.5
C10—C7—C8105.2 (6)O3—C13—H13B109.5
C10—C7—C1131.7 (6)H13A—C13—H13B109.5
C8—C7—C1123.1 (6)O3—C13—H13C109.5
O1—C8—O2117.1 (6)H13A—C13—H13C109.5
O1—C8—C7132.0 (7)H13B—C13—H13C109.5
O2—C8—C7110.8 (5)
C6—C1—C2—C30.5 (10)C8—O2—C9—C10−5.6 (6)
C7—C1—C2—C3−179.3 (6)C8—O2—C9—C11116.8 (5)
C1—C2—C3—C40.1 (12)C13—O3—C10—C7−168.3 (5)
C2—C3—C4—C5−0.3 (12)C13—O3—C10—C914.6 (8)
C3—C4—C5—C60.0 (12)C8—C7—C10—O3−179.8 (5)
C2—C1—C6—C5−0.8 (9)C1—C7—C10—O30.7 (9)
C7—C1—C6—C5179.0 (6)C8—C7—C10—C9−2.4 (6)
C4—C5—C6—C10.6 (11)C1—C7—C10—C9178.2 (5)
C6—C1—C7—C10−173.2 (6)O2—C9—C10—O3−177.6 (5)
C2—C1—C7—C106.6 (9)C11—C9—C10—O365.0 (8)
C6—C1—C7—C87.5 (8)O2—C9—C10—C75.0 (6)
C2—C1—C7—C8−172.7 (6)C11—C9—C10—C7−112.4 (6)
C9—O2—C8—O1−175.9 (5)O2—C9—C11—O4−66.2 (6)
C9—O2—C8—C74.6 (6)C10—C9—C11—O448.7 (6)
C10—C7—C8—O1179.2 (7)O2—C9—C11—C1255.9 (7)
C1—C7—C8—O1−1.4 (10)C10—C9—C11—C12170.7 (5)
C10—C7—C8—O2−1.4 (6)O4—C11—C12—O5−69.4 (6)
C1—C7—C8—O2178.1 (5)C9—C11—C12—O5170.5 (6)
D—H···AD—HH···AD···AD—H···A
O4—H4···O5i0.821.892.707 (5)178
O5—H5···O1ii0.821.942.741 (6)165
C12—H12B···O4iii0.972.583.365 (8)139
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯A D—HH⋯A DA D—H⋯A
O4—H4⋯O5i 0.821.892.707 (5)178
O5—H5⋯O1ii 0.821.942.741 (6)165
C12—H12B⋯O4iii 0.972.583.365 (8)139

Symmetry codes: (i) ; (ii) ; (iii) .

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