Literature DB >> 25484712

Crystal structure of 3-methyl-1-phenyl-5-(1H-pyrrol-1-yl)-1H-pyrazole-4-carbaldehyde.

Joel T Mague1, Shaaban K Mohamed2, Mehmet Akkurt3, Talaat I El-Emary4, Mustafa R Albayati5.   

Abstract

In the title compound, C15H13N3O, the pyrrolyl and phenyl rings make dihedral angles of 58.99 (5) and 34.95 (5)°, respectively, with the central pyrazole ring. In the crystal, weak, pairwise C-H⋯O inter-actions across centers of symmetry form dimers, which are further associated into corrugated sheets running approximately parallel to (100) via weak C-H⋯N inter-actions.

Entities:  

Keywords:  crystal structure; dimers; pyrazole ring; pyrrolyl ring

Year:  2014        PMID: 25484712      PMCID: PMC4257204          DOI: 10.1107/S1600536814020984

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the biological activity of pyrazoline-containing compounds see: Nauduri & Reddy (1998 ▶); Korgaokar et al. (1996 ▶); Taylor & Patel (1992 ▶); Ozdemir et al. (2007 ▶); Ruhoğlu et al. (2005 ▶); Palaska et al. (2001 ▶); Rajendra Prasad et al. (2005 ▶); Udupi et al. (1998 ▶). For synthetic and industrial applications of pyrazolo­[3,4-b]pyrazines see: Rangnekar & Dhamnaskar (1990 ▶); Kopp et al. (2001 ▶); Farghaly & El-Kashef (2005 ▶).

Experimental

Crystal data

C15H13N3O M = 251.28 Monoclinic, a = 9.5807 (8) Å b = 15.1720 (13) Å c = 8.7370 (8) Å β = 93.6180 (11)° V = 1267.46 (19) Å3 Z = 4 Mo Kα radiation μ = 0.09 mm−1 T = 150 K 0.29 × 0.17 × 0.04 mm

Data collection

Bruker SMART APEX CCD diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2014 ▶) T min = 0.98, T max = 1.00 26282 measured reflections 3321 independent reflections 2527 reflections with I > 2σ(I) R int = 0.053

Refinement

R[F 2 > 2σ(F 2)] = 0.044 wR(F 2) = 0.114 S = 1.07 3321 reflections 173 parameters H-atom parameters constrained Δρmax = 0.31 e Å−3 Δρmin = −0.25 e Å−3

Data collection: APEX2 (Bruker, 2014 ▶); cell refinement: SAINT (Bruker, 2014 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXT (Bruker, 2014 ▶); program(s) used to refine structure: SHELXL2014 (Sheldrick, 2008 ▶); molecular graphics: DIAMOND (Brandenburg & Putz, 2012 ▶); software used to prepare material for publication: SHELXTL (Sheldrick, 2008 ▶). Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536814020984/sj5428sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536814020984/sj5428Isup2.hkl Click here for additional data file. Supporting information file. DOI: 10.1107/S1600536814020984/sj5428Isup3.cml Click here for additional data file. . DOI: 10.1107/S1600536814020984/sj5428fig1.tif Perspective view of the title mol­ecule with labeling scheme and 50% probability ellipsoids for non-H atoms. Click here for additional data file. c . DOI: 10.1107/S1600536814020984/sj5428fig2.tif Packing viewed down the c axis showing an edge view of one corrugated sheet with hydrogen bonds drawn as red and blue dashed lines. Click here for additional data file. a . DOI: 10.1107/S1600536814020984/sj5428fig3.tif Packing viewed down the a axis showing the C—H⋯O and C—H⋯N inter­actions as red and blue dashed lines, respectively. CCDC reference: 1025251 Additional supporting information: crystallographic information; 3D view; checkCIF report
C15H13N3OF(000) = 528
Mr = 251.28Dx = 1.317 Mg m3
Monoclinic, P21/cMo Kα radiation, λ = 0.71073 Å
a = 9.5807 (8) ÅCell parameters from 6992 reflections
b = 15.1720 (13) Åθ = 2.5–29.1°
c = 8.7370 (8) ŵ = 0.09 mm1
β = 93.6180 (11)°T = 150 K
V = 1267.46 (19) Å3Plate, colourless
Z = 40.29 × 0.17 × 0.04 mm
Bruker SMART APEX CCD diffractometer3321 independent reflections
Radiation source: fine-focus sealed tube2527 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.053
Detector resolution: 8.3660 pixels mm-1θmax = 29.2°, θmin = 2.1°
φ and ω scansh = −13→13
Absorption correction: multi-scan (SADABS; Bruker, 2014)k = −20→20
Tmin = 0.98, Tmax = 1.00l = −11→11
26282 measured reflections
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.044Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.114H-atom parameters constrained
S = 1.07w = 1/[σ2(Fo2) + (0.0533P)2 + 0.2193P] where P = (Fo2 + 2Fc2)/3
3321 reflections(Δ/σ)max < 0.001
173 parametersΔρmax = 0.31 e Å3
0 restraintsΔρmin = −0.25 e Å3
Experimental. The diffraction data were collected in three sets of400 frames (0.5° width in ω) at φ = 0, 120and 240°. A scan time of 80 sec/frame was used.
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes)are estimated using the full covariance matrix. The cell e.s.d.'s are takeninto account individually in the estimation of e.s.d.'s in distances, anglesand torsion angles; correlations between e.s.d.'s in cell parameters are onlyused when they are defined by crystal symmetry. An approximate (isotropic)treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR andgoodness of fit S are based on F2, conventional R-factors R are basedon F, with F set to zero for negative F2. The threshold expression ofF2 > σ(F2) is used only for calculating R-factors(gt) etc. and isnot relevant to the choice of reflections for refinement. R-factors basedon F2 are statistically about twice as large as those based on F, and R-factors based on ALL data will be even larger. H-atoms attached to carbonwere placed in calculated positions (C—H = 0.95 - 0.98 Å). All wereincluded as riding contributions with isotropic displacement parameters1.2 - 1.5 times those of the attached atoms.
xyzUiso*/Ueq
O10.33317 (10)0.54403 (7)0.91467 (11)0.0336 (2)
N10.59037 (11)0.76421 (7)0.80193 (12)0.0234 (2)
N20.67710 (11)0.71108 (7)0.72255 (12)0.0211 (2)
N30.70035 (11)0.55911 (6)0.64732 (12)0.0210 (2)
C10.63304 (13)0.62637 (8)0.72276 (14)0.0208 (3)
C20.51547 (13)0.62272 (8)0.80704 (14)0.0217 (3)
C30.49451 (13)0.71148 (8)0.85367 (14)0.0230 (3)
C40.38179 (14)0.74728 (10)0.94605 (16)0.0306 (3)
H4A0.39770.81030.96440.046*
H4B0.38270.71621.04450.046*
H4C0.29090.73880.89010.046*
C50.43357 (14)0.54534 (9)0.83563 (15)0.0253 (3)
H50.45970.49160.78960.030*
C60.79899 (13)0.74965 (8)0.66330 (14)0.0206 (3)
C70.92330 (13)0.70303 (8)0.66282 (14)0.0242 (3)
H70.92850.64410.69970.029*
C81.03977 (14)0.74327 (9)0.60798 (15)0.0269 (3)
H81.12510.71150.60630.032*
C91.03304 (14)0.82956 (9)0.55550 (15)0.0276 (3)
H91.11310.85670.51720.033*
C100.90846 (15)0.87586 (9)0.55948 (15)0.0276 (3)
H100.90400.93540.52560.033*
C110.79111 (13)0.83644 (8)0.61199 (15)0.0240 (3)
H110.70570.86820.61320.029*
C120.76608 (14)0.48753 (8)0.71948 (15)0.0250 (3)
H120.76250.47200.82450.030*
C130.83647 (15)0.44366 (9)0.61277 (15)0.0288 (3)
H130.89130.39200.62990.035*
C140.81336 (14)0.48874 (9)0.47146 (15)0.0276 (3)
H140.84930.47220.37670.033*
C150.73103 (14)0.55959 (8)0.49470 (14)0.0240 (3)
H150.70010.60180.41980.029*
U11U22U33U12U13U23
O10.0322 (5)0.0361 (6)0.0335 (5)−0.0085 (4)0.0099 (4)0.0015 (4)
N10.0209 (5)0.0216 (5)0.0282 (6)0.0022 (4)0.0048 (4)−0.0046 (4)
N20.0209 (5)0.0177 (5)0.0251 (5)0.0001 (4)0.0044 (4)−0.0023 (4)
N30.0249 (5)0.0171 (5)0.0214 (5)0.0011 (4)0.0038 (4)−0.0007 (4)
C10.0233 (6)0.0172 (6)0.0216 (6)−0.0004 (5)0.0002 (5)−0.0002 (4)
C20.0217 (6)0.0222 (6)0.0211 (6)−0.0005 (5)0.0012 (5)−0.0007 (5)
C30.0214 (6)0.0242 (6)0.0232 (6)0.0006 (5)0.0007 (5)−0.0024 (5)
C40.0258 (7)0.0327 (7)0.0341 (7)0.0010 (6)0.0071 (6)−0.0065 (6)
C50.0274 (6)0.0254 (6)0.0229 (6)−0.0033 (5)0.0008 (5)0.0006 (5)
C60.0218 (6)0.0197 (6)0.0204 (6)−0.0025 (5)0.0033 (5)−0.0022 (5)
C70.0249 (6)0.0208 (6)0.0270 (6)0.0007 (5)0.0028 (5)−0.0009 (5)
C80.0234 (6)0.0277 (7)0.0299 (7)−0.0003 (5)0.0044 (5)−0.0049 (5)
C90.0279 (7)0.0279 (7)0.0275 (7)−0.0077 (5)0.0067 (5)−0.0042 (5)
C100.0331 (7)0.0214 (6)0.0284 (7)−0.0041 (5)0.0026 (5)0.0005 (5)
C110.0253 (6)0.0192 (6)0.0272 (6)0.0010 (5)0.0005 (5)−0.0011 (5)
C120.0315 (7)0.0184 (6)0.0250 (6)0.0016 (5)0.0002 (5)0.0021 (5)
C130.0342 (7)0.0209 (6)0.0313 (7)0.0062 (5)0.0012 (6)−0.0015 (5)
C140.0318 (7)0.0276 (7)0.0238 (6)0.0024 (5)0.0043 (5)−0.0041 (5)
C150.0294 (7)0.0234 (6)0.0195 (6)0.0012 (5)0.0028 (5)0.0002 (5)
O1—C51.2191 (16)C6—C111.3915 (17)
N1—C31.3191 (16)C7—C81.3838 (18)
N1—N21.3762 (14)C7—H70.9500
N2—C11.3529 (15)C8—C91.3873 (19)
N2—C61.4319 (15)C8—H80.9500
N3—C151.3835 (16)C9—C101.3873 (19)
N3—C121.3869 (16)C9—H90.9500
N3—C11.3946 (15)C10—C111.3775 (18)
C1—C21.3852 (17)C10—H100.9500
C2—C31.4248 (17)C11—H110.9500
C2—C51.4427 (17)C12—C131.3589 (19)
C3—C41.4909 (17)C12—H120.9500
C4—H4A0.9800C13—C141.4165 (19)
C4—H4B0.9800C13—H130.9500
C4—H4C0.9800C14—C151.3562 (18)
C5—H50.9500C14—H140.9500
C6—C71.3854 (17)C15—H150.9500
C3—N1—N2105.85 (10)C8—C7—C6119.21 (12)
C1—N2—N1110.94 (10)C8—C7—H7120.4
C1—N2—C6130.57 (10)C6—C7—H7120.4
N1—N2—C6118.36 (10)C7—C8—C9120.60 (12)
C15—N3—C12108.92 (10)C7—C8—H8119.7
C15—N3—C1125.76 (10)C9—C8—H8119.7
C12—N3—C1124.63 (10)C10—C9—C8119.45 (12)
N2—C1—C2107.63 (10)C10—C9—H9120.3
N2—C1—N3122.74 (11)C8—C9—H9120.3
C2—C1—N3129.63 (11)C11—C10—C9120.67 (12)
C1—C2—C3104.38 (11)C11—C10—H10119.7
C1—C2—C5126.44 (11)C9—C10—H10119.7
C3—C2—C5129.17 (12)C10—C11—C6119.30 (12)
N1—C3—C2111.19 (11)C10—C11—H11120.4
N1—C3—C4120.56 (11)C6—C11—H11120.4
C2—C3—C4128.25 (12)C13—C12—N3107.60 (11)
C3—C4—H4A109.5C13—C12—H12126.2
C3—C4—H4B109.5N3—C12—H12126.2
H4A—C4—H4B109.5C12—C13—C14107.73 (12)
C3—C4—H4C109.5C12—C13—H13126.1
H4A—C4—H4C109.5C14—C13—H13126.1
H4B—C4—H4C109.5C15—C14—C13108.21 (12)
O1—C5—C2124.65 (12)C15—C14—H14125.9
O1—C5—H5117.7C13—C14—H14125.9
C2—C5—H5117.7C14—C15—N3107.53 (11)
C7—C6—C11120.75 (11)C14—C15—H15126.2
C7—C6—N2120.88 (11)N3—C15—H15126.2
C11—C6—N2118.31 (11)
C3—N1—N2—C11.28 (13)C3—C2—C5—O1−4.1 (2)
C3—N1—N2—C6−174.98 (10)C1—N2—C6—C7−32.38 (19)
N1—N2—C1—C2−1.18 (13)N1—N2—C6—C7143.01 (12)
C6—N2—C1—C2174.49 (11)C1—N2—C6—C11150.22 (13)
N1—N2—C1—N3178.45 (10)N1—N2—C6—C11−34.39 (16)
C6—N2—C1—N3−5.88 (19)C11—C6—C7—C8−1.13 (19)
C15—N3—C1—N2−53.33 (18)N2—C6—C7—C8−178.47 (11)
C12—N3—C1—N2116.10 (14)C6—C7—C8—C90.68 (19)
C15—N3—C1—C2126.21 (14)C7—C8—C9—C100.54 (19)
C12—N3—C1—C2−64.36 (19)C8—C9—C10—C11−1.3 (2)
N2—C1—C2—C30.59 (13)C9—C10—C11—C60.87 (19)
N3—C1—C2—C3−179.00 (12)C7—C6—C11—C100.37 (19)
N2—C1—C2—C5179.33 (11)N2—C6—C11—C10177.77 (11)
N3—C1—C2—C5−0.3 (2)C15—N3—C12—C13−0.26 (15)
N2—N1—C3—C2−0.88 (14)C1—N3—C12—C13−171.20 (11)
N2—N1—C3—C4−179.99 (11)N3—C12—C13—C14−0.27 (15)
C1—C2—C3—N10.20 (14)C12—C13—C14—C150.71 (16)
C5—C2—C3—N1−178.50 (12)C13—C14—C15—N3−0.86 (15)
C1—C2—C3—C4179.21 (12)C12—N3—C15—C140.70 (15)
C5—C2—C3—C40.5 (2)C1—N3—C15—C14171.52 (12)
C1—C2—C5—O1177.49 (13)
D—H···AD—HH···AD···AD—H···A
C15—H15···N1i0.952.483.3931 (17)161
C12—H12···O1ii0.952.523.4255 (17)159
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯A D—HH⋯A DA D—H⋯A
C15—H15⋯N1i 0.952.483.3931 (17)161
C12—H12⋯O1ii 0.952.523.4255 (17)159

Symmetry codes: (i) ; (ii) .

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