Literature DB >> 25484682

Crystal structure of 4-chloro-N-{[1-(4-chloro-benzo-yl)piperidin-4-yl]meth-yl}benzamide monohydrate.

K Prathebha1, D Reuben Jonathan2, S Sathya1, J Jovita1, G Usha1.   

Abstract

In the title compound, C20H20Cl2N2O2·H2O, the piperidine ring adopts a chair conformation with the two substituent benzene rings inclined to one another [dihedral angle 84.63 (9)°]. In the crystal, the components are linked by Ow-H⋯O, N-H⋯Ow (w = water) and C-H⋯O hydrogen bonds, generating a sheet structure lying parallel to (101).

Entities:  

Keywords:  benzamide; crystal structure; hydrogen bonding; piperidine

Year:  2014        PMID: 25484682      PMCID: PMC4257193          DOI: 10.1107/S1600536814018522

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the synthesis of the title compound, see: Prathebha et al. (2013 ▶). For the biological activity of piperdine derivatives, see: Parthiban et al. (2005 ▶, 2009 ▶, 2011 ▶). For related structures, see: Prathebha et al. (2013 ▶, 2014 ▶); Ávila et al. (2010 ▶).

Experimental

Crystal data

C20H20Cl2N2O2·H2O M = 409.30 Monoclinic, a = 8.965 (5) Å b = 19.613 (5) Å c = 11.456 (5) Å β = 96.989 (5)° V = 1999.3 (15) Å3 Z = 4 Mo Kα radiation μ = 0.35 mm−1 T = 293 K 0.20 × 0.15 × 0.10 mm

Data collection

Bruker APEII CCD diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2008 ▶) T min = 0.939, T max = 0.966 18886 measured reflections 4985 independent reflections 2967 reflections with I > 2σ(I) R int = 0.030

Refinement

R[F 2 > 2σ(F 2)] = 0.043 wR(F 2) = 0.120 S = 1.03 4985 reflections 252 parameters 2 restraints H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.23 e Å−3 Δρmin = −0.30 e Å−3

Data collection: APEX2 (Bruker, 2008 ▶); cell refinement: SAINT (Bruker, 2008 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 for Windows (Farrugia, 2012 ▶); software used to prepare material for publication: SHELXL97 and PLATON (Spek, 2009 ▶). Crystal structure: contains datablock(s) I, New_Global_Publ_Block. DOI: 10.1107/S1600536814018522/zs2310sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536814018522/zs2310Isup2.hkl Click here for additional data file. Supporting information file. DOI: 10.1107/S1600536814018522/zs2310Isup3.cml Click here for additional data file. . DOI: 10.1107/S1600536814018522/zs2310fig1.tif The mol­ecular structure of the title compound, with displacement ellipsoids drawn at the 30% probability level. Click here for additional data file. a . DOI: 10.1107/S1600536814018522/zs2310fig2.tif The packing of the mol­ecules in the unit cell, viewed along a. Dashed lines indicate the hydrogen bonds. Click here for additional data file. . DOI: 10.1107/S1600536814018522/zs2310fig3.tif Experimental procedure CCDC reference: 1014811 Additional supporting information: crystallographic information; 3D view; checkCIF report
C20H20Cl2N2O2·H2OZ = 4
Mr = 409.30F(000) = 856
Monoclinic, P21/nDx = 1.360 Mg m3
Hall symbol: -P 2ynMo Kα radiation, λ = 0.71073 Å
a = 8.965 (5) ÅCell parameters from 4985 reflections
b = 19.613 (5) ŵ = 0.35 mm1
c = 11.456 (5) ÅT = 293 K
β = 96.989 (5)°Block, colourless
V = 1999.3 (15) Å30.20 × 0.15 × 0.10 mm
Bruker APEII CCD diffractometer4985 independent reflections
Radiation source: fine-focus sealed tube2967 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.030
ω and φ scanθmax = 28.3°, θmin = 2.1°
Absorption correction: multi-scan (SADABS; Bruker, 2008)h = −11→11
Tmin = 0.939, Tmax = 0.966k = −26→26
18886 measured reflectionsl = −15→15
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.043Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.120H atoms treated by a mixture of independent and constrained refinement
S = 1.03w = 1/[σ2(Fo2) + (0.0472P)2 + 0.401P] where P = (Fo2 + 2Fc2)/3
4985 reflections(Δ/σ)max < 0.001
252 parametersΔρmax = 0.23 e Å3
2 restraintsΔρmin = −0.30 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
C10.2856 (2)0.04517 (10)−0.36865 (17)0.0557 (5)
C20.1651 (2)0.05009 (11)−0.30553 (18)0.0604 (5)
H20.06760.0448−0.34260.072*
C30.1908 (2)0.06295 (10)−0.18659 (17)0.0548 (5)
H30.10960.0658−0.14340.066*
C40.33501 (19)0.07168 (9)−0.13004 (15)0.0445 (4)
C50.4537 (2)0.06734 (10)−0.19643 (16)0.0508 (5)
H50.55130.0734−0.16010.061*
C60.4299 (2)0.05428 (11)−0.31542 (17)0.0550 (5)
H60.51050.0517−0.35910.066*
C70.3542 (2)0.08172 (10)0.00066 (16)0.0499 (5)
C80.5234 (2)0.10784 (10)0.17983 (15)0.0525 (5)
H8A0.62090.08720.20270.063*
H8B0.44970.08200.21670.063*
C90.52633 (19)0.18034 (10)0.22638 (14)0.0443 (4)
H90.59990.20630.18770.053*
C100.5769 (2)0.18086 (10)0.35899 (15)0.0502 (5)
H10A0.50850.15330.39860.060*
H10B0.67640.16100.37450.060*
C110.5798 (2)0.25282 (11)0.40699 (15)0.0520 (5)
H11A0.60680.25170.49160.062*
H11B0.65530.27920.37310.062*
C120.3794 (2)0.28733 (11)0.25369 (15)0.0537 (5)
H12A0.44540.31590.21360.064*
H12B0.27940.30700.24180.064*
C130.3756 (2)0.21620 (10)0.20237 (15)0.0487 (4)
H13A0.34690.21890.11810.058*
H13B0.30000.18950.23570.058*
C140.3605 (2)0.32021 (10)0.45609 (15)0.0447 (4)
C150.41215 (19)0.31470 (9)0.58496 (14)0.0419 (4)
C160.4207 (2)0.25291 (10)0.64373 (16)0.0513 (5)
H160.39910.21260.60230.062*
C170.4615 (2)0.25100 (11)0.76433 (17)0.0561 (5)
H170.46680.20960.80430.067*
C180.4939 (2)0.31065 (11)0.82394 (15)0.0533 (5)
C190.4847 (2)0.37221 (11)0.76756 (16)0.0558 (5)
H190.50660.41230.80950.067*
C200.4425 (2)0.37407 (10)0.64751 (15)0.0492 (4)
H200.43450.41580.60860.059*
N10.48785 (17)0.10246 (8)0.05253 (13)0.0504 (4)
H10.55600.11310.00900.061*
N20.43298 (16)0.28557 (8)0.37952 (12)0.0483 (4)
O10.24827 (16)0.07042 (10)0.05634 (13)0.0782 (5)
O20.25144 (15)0.35694 (7)0.42328 (11)0.0607 (4)
O1W0.1758 (2)−0.02509 (12)0.22242 (18)0.0874 (5)
Cl10.25541 (8)0.02408 (4)−0.51685 (5)0.0906 (2)
Cl20.54727 (9)0.30789 (4)0.97486 (4)0.0908 (2)
H1WA0.188 (5)−0.0575 (19)0.172 (3)0.19 (2)*
H1WB0.181 (9)0.002 (4)0.162 (5)0.34 (4)*
U11U22U33U12U13U23
C10.0626 (12)0.0528 (13)0.0495 (10)0.0066 (10)−0.0011 (9)−0.0074 (9)
C20.0482 (11)0.0644 (14)0.0657 (13)0.0005 (10)−0.0047 (9)−0.0062 (10)
C30.0457 (10)0.0572 (13)0.0622 (12)−0.0030 (9)0.0088 (9)−0.0050 (10)
C40.0466 (10)0.0346 (10)0.0528 (10)−0.0020 (8)0.0076 (8)−0.0052 (8)
C50.0447 (10)0.0519 (12)0.0556 (11)−0.0026 (9)0.0056 (8)−0.0118 (9)
C60.0534 (11)0.0591 (13)0.0539 (11)0.0027 (9)0.0119 (9)−0.0091 (9)
C70.0498 (11)0.0476 (12)0.0538 (10)−0.0021 (9)0.0121 (9)−0.0048 (9)
C80.0574 (11)0.0545 (13)0.0458 (10)0.0015 (9)0.0073 (8)−0.0021 (9)
C90.0436 (9)0.0514 (12)0.0384 (8)−0.0011 (8)0.0074 (7)−0.0037 (8)
C100.0437 (10)0.0646 (14)0.0420 (9)0.0108 (9)0.0035 (7)−0.0027 (9)
C110.0414 (10)0.0711 (14)0.0427 (9)0.0064 (9)0.0013 (7)−0.0124 (9)
C120.0588 (11)0.0613 (13)0.0396 (9)0.0121 (10)0.0000 (8)−0.0028 (9)
C130.0477 (10)0.0586 (12)0.0386 (8)0.0028 (9)0.0001 (7)−0.0037 (8)
C140.0462 (10)0.0449 (11)0.0431 (9)0.0019 (9)0.0064 (7)−0.0014 (8)
C150.0413 (9)0.0459 (11)0.0392 (8)0.0041 (8)0.0083 (7)−0.0010 (8)
C160.0591 (11)0.0428 (11)0.0520 (10)0.0007 (9)0.0068 (8)−0.0011 (9)
C170.0653 (12)0.0505 (13)0.0532 (11)0.0020 (10)0.0098 (9)0.0136 (10)
C180.0575 (11)0.0655 (14)0.0379 (9)0.0043 (10)0.0104 (8)0.0034 (9)
C190.0689 (13)0.0513 (13)0.0472 (10)0.0008 (10)0.0072 (9)−0.0079 (9)
C200.0597 (11)0.0425 (11)0.0459 (9)0.0018 (9)0.0080 (8)0.0027 (8)
N10.0529 (9)0.0543 (10)0.0456 (8)−0.0062 (8)0.0124 (7)−0.0097 (7)
N20.0454 (8)0.0599 (10)0.0389 (7)0.0093 (7)0.0016 (6)−0.0078 (7)
O10.0602 (9)0.1147 (14)0.0636 (9)−0.0184 (9)0.0238 (7)−0.0073 (9)
O20.0645 (8)0.0697 (10)0.0478 (7)0.0263 (7)0.0061 (6)0.0034 (7)
O1W0.0768 (11)0.1049 (15)0.0855 (12)−0.0057 (10)0.0296 (9)−0.0120 (12)
Cl10.0863 (4)0.1263 (6)0.0551 (3)0.0222 (4)−0.0080 (3)−0.0227 (3)
Cl20.1259 (6)0.1059 (6)0.0391 (3)0.0055 (4)0.0041 (3)0.0075 (3)
C1—C61.373 (3)C11—H11A0.9700
C1—C21.374 (3)C11—H11B0.9700
C1—Cl11.736 (2)C12—N21.463 (2)
C2—C31.377 (3)C12—C131.513 (3)
C2—H20.9300C12—H12A0.9700
C3—C41.385 (3)C12—H12B0.9700
C3—H30.9300C13—H13A0.9700
C4—C51.384 (3)C13—H13B0.9700
C4—C71.499 (2)C14—O21.235 (2)
C5—C61.378 (3)C14—N21.339 (2)
C5—H50.9300C14—C151.496 (2)
C6—H60.9300C15—C201.377 (3)
C7—O11.227 (2)C15—C161.384 (3)
C7—N11.334 (2)C16—C171.386 (3)
C8—N11.458 (2)C16—H160.9300
C8—C91.518 (3)C17—C181.368 (3)
C8—H8A0.9700C17—H170.9300
C8—H8B0.9700C18—C191.367 (3)
C9—C131.518 (3)C18—Cl21.738 (2)
C9—C101.532 (2)C19—C201.382 (2)
C9—H90.9800C19—H190.9300
C10—C111.514 (3)C20—H200.9300
C10—H10A0.9700N1—H10.8600
C10—H10B0.9700O1W—H1WA0.872 (19)
C11—N21.464 (2)O1W—H1WB0.87 (2)
C6—C1—C2121.02 (19)C10—C11—H11B109.5
C6—C1—Cl1119.43 (16)H11A—C11—H11B108.1
C2—C1—Cl1119.50 (16)N2—C12—C13110.51 (15)
C1—C2—C3119.08 (18)N2—C12—H12A109.5
C1—C2—H2120.5C13—C12—H12A109.5
C3—C2—H2120.5N2—C12—H12B109.5
C2—C3—C4121.31 (18)C13—C12—H12B109.5
C2—C3—H3119.3H12A—C12—H12B108.1
C4—C3—H3119.3C12—C13—C9112.27 (15)
C5—C4—C3118.16 (17)C12—C13—H13A109.1
C5—C4—C7123.68 (16)C9—C13—H13A109.1
C3—C4—C7118.08 (16)C12—C13—H13B109.1
C6—C5—C4121.20 (17)C9—C13—H13B109.1
C6—C5—H5119.4H13A—C13—H13B107.9
C4—C5—H5119.4O2—C14—N2121.73 (16)
C1—C6—C5119.21 (18)O2—C14—C15118.73 (15)
C1—C6—H6120.4N2—C14—C15119.53 (15)
C5—C6—H6120.4C20—C15—C16119.44 (16)
O1—C7—N1122.23 (18)C20—C15—C14118.05 (16)
O1—C7—C4119.57 (17)C16—C15—C14122.37 (16)
N1—C7—C4118.20 (16)C15—C16—C17120.06 (18)
N1—C8—C9114.30 (15)C15—C16—H16120.0
N1—C8—H8A108.7C17—C16—H16120.0
C9—C8—H8A108.7C18—C17—C16119.27 (19)
N1—C8—H8B108.7C18—C17—H17120.4
C9—C8—H8B108.7C16—C17—H17120.4
H8A—C8—H8B107.6C17—C18—C19121.51 (17)
C8—C9—C13113.17 (15)C17—C18—Cl2119.09 (16)
C8—C9—C10110.19 (15)C19—C18—Cl2119.40 (16)
C13—C9—C10109.02 (14)C18—C19—C20119.14 (19)
C8—C9—H9108.1C18—C19—H19120.4
C13—C9—H9108.1C20—C19—H19120.4
C10—C9—H9108.1C15—C20—C19120.57 (18)
C11—C10—C9110.88 (16)C15—C20—H20119.7
C11—C10—H10A109.5C19—C20—H20119.7
C9—C10—H10A109.5C7—N1—C8122.88 (15)
C11—C10—H10B109.5C7—N1—H1118.6
C9—C10—H10B109.5C8—N1—H1118.6
H10A—C10—H10B108.1C14—N2—C11125.27 (14)
N2—C11—C10110.84 (15)C14—N2—C12120.41 (15)
N2—C11—H11A109.5C11—N2—C12113.62 (14)
C10—C11—H11A109.5H1WA—O1W—H1WB84 (5)
N2—C11—H11B109.5
C6—C1—C2—C3−1.4 (3)O2—C14—C15—C16122.3 (2)
Cl1—C1—C2—C3176.28 (17)N2—C14—C15—C16−57.7 (2)
C1—C2—C3—C40.7 (3)C20—C15—C16—C17−0.8 (3)
C2—C3—C4—C50.2 (3)C14—C15—C16—C17−176.49 (16)
C2—C3—C4—C7−176.73 (19)C15—C16—C17—C18−0.4 (3)
C3—C4—C5—C6−0.4 (3)C16—C17—C18—C191.0 (3)
C7—C4—C5—C6176.32 (18)C16—C17—C18—Cl2−179.19 (14)
C2—C1—C6—C51.2 (3)C17—C18—C19—C20−0.3 (3)
Cl1—C1—C6—C5−176.49 (16)Cl2—C18—C19—C20179.87 (14)
C4—C5—C6—C1−0.3 (3)C16—C15—C20—C191.5 (3)
C5—C4—C7—O1−164.2 (2)C14—C15—C20—C19177.37 (16)
C3—C4—C7—O112.5 (3)C18—C19—C20—C15−1.0 (3)
C5—C4—C7—N115.3 (3)O1—C7—N1—C85.4 (3)
C3—C4—C7—N1−167.93 (18)C4—C7—N1—C8−174.18 (16)
N1—C8—C9—C1362.2 (2)C9—C8—N1—C7−104.7 (2)
N1—C8—C9—C10−175.49 (14)O2—C14—N2—C11166.40 (19)
C8—C9—C10—C11−179.77 (15)C15—C14—N2—C11−13.5 (3)
C13—C9—C10—C11−55.0 (2)O2—C14—N2—C12−3.4 (3)
C9—C10—C11—N256.1 (2)C15—C14—N2—C12176.71 (17)
N2—C12—C13—C9−54.7 (2)C10—C11—N2—C14132.70 (18)
C8—C9—C13—C12177.72 (15)C10—C11—N2—C12−56.9 (2)
C10—C9—C13—C1254.7 (2)C13—C12—N2—C14−133.45 (18)
O2—C14—C15—C20−53.4 (2)C13—C12—N2—C1155.7 (2)
N2—C14—C15—C20126.55 (19)
D—H···AD—HH···AD···AD—H···A
N1—H1···O2i0.862.193.043 (2)171
O1W—H1WA···O2ii0.87 (2)2.11 (2)2.972 (3)169 (4)
O1W—H1WB···O10.87 (2)1.96 (3)2.802 (3)163 (7)
C5—H5···O2i0.932.363.212 (3)152
C8—H8B···O10.972.432.789 (3)102
C12—H12B···O20.972.342.738 (2)104
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯A D—HH⋯A DA D—H⋯A
N1—H1⋯O2i 0.862.193.043 (2)171
O1W—H1WA⋯O2ii 0.87 (2)2.11 (2)2.972 (3)169 (4)
O1W—H1WB⋯O10.87 (2)1.96 (3)2.802 (3)163 (7)
C5—H5⋯O2i 0.932.363.212 (3)152

Symmetry codes: (i) ; (ii) .

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