Literature DB >> 25484681

Crystal structure of 5-chloro-3-(4-fluoro-phenyl-sulfin-yl)-2,4,6-trimethyl-1-benzo-furan.

Hong Dae Choi1, Uk Lee2.   

Abstract

In the title compound, C17H14ClFO2S, the dihedral angle between the mean planes of the benzo-furan ring system [maximum deviation = 0.037 (2) Å] and the 4-fluoro-benzene ring is 71.92 (5)°. An intra-molecular C-H⋯O hydrogen bond occurs. In the crystal, mol-ecules are linked by π-π stacking between the benzene rings of neighbouring mol-ecules [centroid-centroid distance = 3.7103 (10) Å]. These mol-ecules are further linked by C-S⋯π [S⋯centroid = 3.570 (1) Å] and C-H⋯O inter-actions, resulting in a three-dimensional supra-molecular network.

Entities:  

Keywords:  4-fluoro­phen­yl; C—S⋯π and C—H⋯O inter­actions; benzo­furan; crystal structure; π–π inter­actions

Year:  2014        PMID: 25484681      PMCID: PMC4257165          DOI: 10.1107/S1600536814019229

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the pharmacological properties of benzo­furan compounds, see: Aslam et al. (2009 ▶); Galal et al. (2009 ▶); Howlett et al. (1999 ▶); Khan et al. (2005 ▶); Ono et al. (2002 ▶). For natural products with a benzo­furan ring, see: Akgul & Anil (2003 ▶); Soekamto et al. (2003 ▶). For the synthesis of the starting material 5-chloro-3-(4-fluoro­phenyl­sulfan­yl)-2,4,6-trimethyl-1-benzo­furan, see: Choi et al. (1999 ▶). For a related structure, see: Choi et al. (2012 ▶).

Experimental

Crystal data

C17H14ClFO2S M = 336.79 Monoclinic, a = 21.7503 (3) Å b = 10.6444 (2) Å c = 16.4061 (3) Å β = 126.622 (1)° V = 3048.49 (9) Å3 Z = 8 Mo Kα radiation μ = 0.40 mm−1 T = 173 K 0.43 × 0.26 × 0.25 mm

Data collection

Bruker SMART APEXII CCD diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2009 ▶) T min = 0.846, T max = 0.908 14427 measured reflections 3777 independent reflections 3158 reflections with I > 2σ(I) R int = 0.030

Refinement

R[F 2 > 2σ(F 2)] = 0.037 wR(F 2) = 0.096 S = 1.06 3777 reflections 202 parameters H-atom parameters constrained Δρmax = 0.27 e Å−3 Δρmin = −0.38 e Å−3

Data collection: APEX2 (Bruker, 2009 ▶); cell refinement: SAINT (Bruker, 2009 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 for Windows (Farrugia, 2012 ▶) and DIAMOND (Brandenburg, 1998 ▶); software used to prepare material for publication: SHELXL97. Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536814019229/xu5819sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536814019229/xu5819Isup2.hkl Click here for additional data file. Supporting information file. DOI: 10.1107/S1600536814019229/xu5819Isup3.cml Click here for additional data file. . DOI: 10.1107/S1600536814019229/xu5819fig1.tif The mol­ecular structure of the title compound with the atom numbering scheme. Displacement ellipsoids are drawn at the 50% probability level. H atoms are presented as small spheres of arbitrary radius. Click here for additional data file. x y x y x y y . DOI: 10.1107/S1600536814019229/xu5819fig2.tif A view of the C—H⋯O, C—S⋯π and π⋯π inter­actions (dotted lines) in the crystal structure of the title compound. H atoms non-participating in hydrogen-bonding were omitted for clarity. [Symmetry codes: (i) − x + , y − , − z + 3/2; (ii) − x + 1, − y + 1, − z + 1; (iii) 1.5 − x + , y + , − y + .] CCDC reference: 1021158 Additional supporting information: crystallographic information; 3D view; checkCIF report
C17H14ClFO2SF(000) = 1392
Mr = 336.79Dx = 1.468 Mg m3
Monoclinic, C2/cMelting point = 433–432 K
Hall symbol: -C 2ycMo Kα radiation, λ = 0.71073 Å
a = 21.7503 (3) ÅCell parameters from 6565 reflections
b = 10.6444 (2) Åθ = 2.6–28.3°
c = 16.4061 (3) ŵ = 0.40 mm1
β = 126.622 (1)°T = 173 K
V = 3048.49 (9) Å3Block, colourless
Z = 80.43 × 0.26 × 0.25 mm
Bruker SMART APEXII CCD diffractometer3777 independent reflections
Radiation source: rotating anode3158 reflections with I > 2σ(I)
Graphite multilayer monochromatorRint = 0.030
Detector resolution: 10.0 pixels mm-1θmax = 28.3°, θmin = 2.2°
φ and ω scansh = −28→28
Absorption correction: multi-scan (SADABS; Bruker, 2009)k = −14→13
Tmin = 0.846, Tmax = 0.908l = −17→21
14427 measured reflections
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.037Hydrogen site location: difference Fourier map
wR(F2) = 0.096H-atom parameters constrained
S = 1.06w = 1/[σ2(Fo2) + (0.0482P)2 + 1.6356P] where P = (Fo2 + 2Fc2)/3
3777 reflections(Δ/σ)max = 0.001
202 parametersΔρmax = 0.27 e Å3
0 restraintsΔρmin = −0.38 e Å3
Experimental. 1H NMR (δ p.p.m., CDCl3, 400 Hz): 7.42-7.49 (m, 2H), 7.21 (s, 1H), 7.11-7.17 (m, 2H), 2.72 (s, 3H), 2.44 (s, 3H), 2.31 (s, 3H).
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2sigma(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
Cl10.53070 (2)0.33359 (4)0.37985 (3)0.03606 (13)
S10.74572 (2)0.73246 (4)0.72173 (3)0.02365 (11)
F10.93275 (7)0.44638 (11)0.63815 (9)0.0507 (3)
O10.64319 (6)0.49502 (10)0.78458 (8)0.0269 (2)
O20.70024 (6)0.82105 (10)0.63429 (8)0.0292 (3)
C10.68686 (8)0.61394 (14)0.71580 (11)0.0226 (3)
C20.63706 (8)0.51802 (14)0.64153 (11)0.0213 (3)
C30.61055 (8)0.48595 (14)0.54264 (11)0.0221 (3)
C40.56460 (8)0.37943 (14)0.50245 (11)0.0241 (3)
C50.54266 (8)0.30586 (15)0.55238 (12)0.0265 (3)
C60.56660 (8)0.34393 (15)0.64791 (12)0.0266 (3)
H60.55150.29960.68360.032*
C70.61300 (8)0.44806 (14)0.68942 (11)0.0232 (3)
C80.68791 (9)0.59471 (15)0.79844 (11)0.0262 (3)
C90.63008 (9)0.56232 (16)0.48421 (11)0.0283 (3)
H9A0.67350.52370.49010.042*
H9B0.64380.64780.51180.042*
H9C0.58570.56540.41260.042*
C100.49526 (10)0.18871 (17)0.50524 (15)0.0374 (4)
H10A0.49030.14670.55420.056*
H10B0.52030.13200.48620.056*
H10C0.44430.21110.44450.056*
C110.72805 (11)0.65747 (18)0.89850 (13)0.0383 (4)
H11A0.69060.68390.90990.057*
H11B0.75560.73120.89980.057*
H11C0.76460.59880.95210.057*
C120.80080 (8)0.63903 (14)0.69532 (11)0.0225 (3)
C130.83516 (9)0.52796 (15)0.74711 (12)0.0284 (3)
H130.82770.49700.79490.034*
C140.88046 (10)0.46287 (16)0.72827 (13)0.0331 (4)
H140.90480.38660.76290.040*
C150.88957 (10)0.51084 (16)0.65836 (13)0.0327 (4)
C160.85635 (9)0.62098 (16)0.60663 (12)0.0299 (4)
H160.86350.65110.55830.036*
C170.81203 (9)0.68691 (14)0.62708 (11)0.0255 (3)
H170.78950.76480.59420.031*
U11U22U33U12U13U23
Cl10.0410 (2)0.0357 (3)0.0314 (2)−0.00531 (17)0.0216 (2)−0.01340 (17)
S10.0279 (2)0.0221 (2)0.0255 (2)−0.00352 (14)0.01845 (17)−0.00428 (14)
F10.0588 (7)0.0477 (7)0.0658 (8)0.0197 (6)0.0481 (7)0.0053 (6)
O10.0290 (6)0.0332 (6)0.0228 (5)−0.0028 (5)0.0177 (5)0.0011 (4)
O20.0361 (6)0.0221 (6)0.0356 (6)0.0038 (5)0.0247 (5)0.0023 (5)
C10.0241 (7)0.0236 (8)0.0232 (7)−0.0011 (6)0.0158 (6)−0.0016 (6)
C20.0220 (7)0.0216 (7)0.0220 (7)0.0020 (6)0.0140 (6)0.0010 (6)
C30.0233 (7)0.0228 (7)0.0234 (7)0.0034 (6)0.0156 (6)−0.0003 (6)
C40.0235 (7)0.0235 (8)0.0238 (7)0.0035 (6)0.0133 (6)−0.0032 (6)
C50.0205 (7)0.0224 (8)0.0329 (8)0.0016 (6)0.0139 (7)0.0004 (6)
C60.0229 (7)0.0268 (8)0.0309 (8)0.0027 (6)0.0165 (7)0.0072 (6)
C70.0221 (7)0.0253 (8)0.0229 (7)0.0030 (6)0.0138 (6)0.0019 (6)
C80.0268 (8)0.0301 (8)0.0242 (7)−0.0009 (6)0.0166 (7)−0.0006 (6)
C90.0332 (8)0.0314 (9)0.0252 (8)−0.0028 (7)0.0202 (7)−0.0030 (6)
C100.0341 (9)0.0292 (9)0.0456 (10)−0.0074 (7)0.0220 (8)−0.0049 (8)
C110.0463 (10)0.0478 (11)0.0248 (8)−0.0100 (8)0.0234 (8)−0.0070 (7)
C120.0221 (7)0.0221 (7)0.0233 (7)−0.0024 (6)0.0136 (6)−0.0026 (6)
C130.0301 (8)0.0269 (8)0.0295 (8)−0.0008 (6)0.0185 (7)0.0035 (6)
C140.0339 (9)0.0256 (8)0.0384 (9)0.0065 (7)0.0209 (8)0.0071 (7)
C150.0331 (9)0.0316 (9)0.0404 (9)0.0038 (7)0.0256 (8)−0.0032 (7)
C160.0355 (9)0.0308 (9)0.0324 (8)−0.0001 (7)0.0251 (8)0.0014 (7)
C170.0294 (8)0.0223 (8)0.0270 (8)0.0000 (6)0.0181 (7)0.0012 (6)
Cl1—C41.7487 (15)C9—H9A0.9800
S1—O21.4943 (11)C9—H9B0.9800
S1—C11.7581 (16)C9—H9C0.9800
S1—C121.7977 (15)C10—H10A0.9800
F1—C151.3543 (19)C10—H10B0.9800
O1—C81.3637 (19)C10—H10C0.9800
O1—C71.3767 (18)C11—H11A0.9800
C1—C81.358 (2)C11—H11B0.9800
C1—C21.458 (2)C11—H11C0.9800
C2—C71.391 (2)C12—C171.378 (2)
C2—C31.402 (2)C12—C131.386 (2)
C3—C41.390 (2)C13—C141.382 (2)
C3—C91.499 (2)C13—H130.9500
C4—C51.406 (2)C14—C151.374 (2)
C5—C61.385 (2)C14—H140.9500
C5—C101.505 (2)C15—C161.373 (2)
C6—C71.375 (2)C16—C171.386 (2)
C6—H60.9500C16—H160.9500
C8—C111.481 (2)C17—H170.9500
O2—S1—C1110.89 (7)H9A—C9—H9C109.5
O2—S1—C12105.80 (7)H9B—C9—H9C109.5
C1—S1—C1299.07 (7)C5—C10—H10A109.5
C8—O1—C7106.37 (11)C5—C10—H10B109.5
C8—C1—C2106.89 (13)H10A—C10—H10B109.5
C8—C1—S1118.35 (12)C5—C10—H10C109.5
C2—C1—S1134.60 (11)H10A—C10—H10C109.5
C7—C2—C3119.32 (14)H10B—C10—H10C109.5
C7—C2—C1104.18 (12)C8—C11—H11A109.5
C3—C2—C1136.49 (14)C8—C11—H11B109.5
C4—C3—C2115.50 (13)H11A—C11—H11B109.5
C4—C3—C9122.47 (13)C8—C11—H11C109.5
C2—C3—C9122.03 (13)H11A—C11—H11C109.5
C3—C4—C5125.13 (14)H11B—C11—H11C109.5
C3—C4—Cl1117.63 (12)C17—C12—C13121.44 (15)
C5—C4—Cl1117.24 (12)C17—C12—S1117.25 (12)
C6—C5—C4117.84 (14)C13—C12—S1121.15 (12)
C6—C5—C10120.25 (15)C14—C13—C12119.09 (15)
C4—C5—C10121.90 (15)C14—C13—H13120.5
C7—C6—C5117.75 (14)C12—C13—H13120.5
C7—C6—H6121.1C15—C14—C13118.54 (15)
C5—C6—H6121.1C15—C14—H14120.7
C6—C7—O1124.54 (14)C13—C14—H14120.7
C6—C7—C2124.32 (14)F1—C15—C16117.87 (16)
O1—C7—C2111.12 (13)F1—C15—C14118.86 (15)
C1—C8—O1111.43 (13)C16—C15—C14123.27 (15)
C1—C8—C11133.34 (15)C15—C16—C17117.94 (15)
O1—C8—C11115.22 (13)C15—C16—H16121.0
C3—C9—H9A109.5C17—C16—H16121.0
C3—C9—H9B109.5C12—C17—C16119.69 (15)
H9A—C9—H9B109.5C12—C17—H17120.2
C3—C9—H9C109.5C16—C17—H17120.2
O2—S1—C1—C8−126.73 (13)C8—O1—C7—C2−0.91 (16)
C12—S1—C1—C8122.41 (13)C3—C2—C7—C63.0 (2)
O2—S1—C1—C258.56 (17)C1—C2—C7—C6−177.73 (14)
C12—S1—C1—C2−52.31 (16)C3—C2—C7—O1−178.47 (13)
C8—C1—C2—C7−0.45 (17)C1—C2—C7—O10.84 (16)
S1—C1—C2—C7174.69 (13)C2—C1—C8—O1−0.09 (18)
C8—C1—C2—C3178.67 (17)S1—C1—C8—O1−176.16 (10)
S1—C1—C2—C3−6.2 (3)C2—C1—C8—C11178.60 (18)
C7—C2—C3—C4−3.6 (2)S1—C1—C8—C112.5 (3)
C1—C2—C3—C4177.39 (16)C7—O1—C8—C10.60 (17)
C7—C2—C3—C9175.93 (14)C7—O1—C8—C11−178.34 (14)
C1—C2—C3—C9−3.1 (3)O2—S1—C12—C1720.45 (14)
C2—C3—C4—C51.2 (2)C1—S1—C12—C17135.32 (13)
C9—C3—C4—C5−178.27 (14)O2—S1—C12—C13−164.15 (12)
C2—C3—C4—Cl1−179.26 (11)C1—S1—C12—C13−49.28 (14)
C9—C3—C4—Cl11.2 (2)C17—C12—C13—C14−1.2 (2)
C3—C4—C5—C62.0 (2)S1—C12—C13—C14−176.44 (12)
Cl1—C4—C5—C6−177.49 (11)C12—C13—C14—C15−0.2 (2)
C3—C4—C5—C10−177.52 (15)C13—C14—C15—F1−178.81 (16)
Cl1—C4—C5—C103.0 (2)C13—C14—C15—C160.5 (3)
C4—C5—C6—C7−2.8 (2)F1—C15—C16—C17179.87 (15)
C10—C5—C6—C7176.77 (15)C14—C15—C16—C170.5 (3)
C5—C6—C7—O1−177.99 (14)C13—C12—C17—C162.3 (2)
C5—C6—C7—C20.4 (2)S1—C12—C17—C16177.70 (12)
C8—O1—C7—C6177.66 (14)C15—C16—C17—C12−1.9 (2)
D—H···AD—HH···AD···AD—H···A
C9—H9B···O20.982.453.3901 (19)161
C13—H13···O2i0.952.463.3191 (19)150
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯A D—HH⋯A DA D—H⋯A
C9—H9B⋯O20.982.453.3901 (19)161
C13—H13⋯O2i 0.952.463.3191 (19)150

Symmetry code: (i) .

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5.  Benzofuran derivatives as Abeta-aggregate-specific imaging agents for Alzheimer's disease.

Authors:  Masahiro Ono; Mei-Ping Kung; Catherine Hou; Hank F Kung
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6.  Synthesis of potent antitumor and antiviral benzofuran derivatives.

Authors:  Shadia A Galal; Amira S Abd El-All; Mohamed M Abdallah; Hoda I El-Diwani
Journal:  Bioorg Med Chem Lett       Date:  2009-03-21       Impact factor: 2.823

7.  Antibacterial and antifungal activity of cicerfuran and related 2-arylbenzofurans and stilbenes.

Authors:  Shazia N Aslam; Philip C Stevenson; Tetsuo Kokubun; David R Hall
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8.  3-(4-Bromo-phenyl-sulfin-yl)-5-chloro-2-methyl-1-benzofuran.

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