Literature DB >> 25484680

Crystal structure of tetraaquabis(8-chloro-9,10-dioxo-9,10-dihydroanthracene-1-carboxyl-ato-κO (1))cobalt(II) dihydrate.

Wen-Juan Cai1, Bo Liu1, Feng-Yi Liu1, Jun-Feng Kou1.   

Abstract

In the title complex, [Co(C15H6ClO4)2(H2O)4]·2H2O, the Co(II) ion is bound by two carboxylate O atoms of two 5-chloro-9,10-anthra-quinone-1-carboxyl-ate anions and four water O atoms in a trans conformation, forming an irregular octa-hedral coordination geometry. This arrangement is stabilized by intra-molecular O-H⋯O hydrogen bonds between water and carboxyl-ate. Further O-H⋯O hydrogen bonds between coordinating and non-coordinating water and carboxyl-ate produce layers of mol-ecules that extend parallel to (001). The organic ligands project above and below the plane. Those ligands of adjacent planes are inter-digitated and there are π-π inter-actions between them with centroid-centroid distances of 3.552 (2) and 3.767 (2) Å that generate a three-dimensional supra-molecular structure.

Entities:  

Keywords:  anti­tumor; cobalt; crystal structure; hydrogen bond

Year:  2014        PMID: 25484680      PMCID: PMC4257216          DOI: 10.1107/S1600536814020972

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the synthesis of the title complex, see: George et al. (2006 ▶). The major advantage of metal-based over organic-based drugs is the ability to vary coordination number, geometry and redox states, and metals can also change the pharmacological properties of organic-based drugs by forming coordination complexes with them, see: Hambley (2007 ▶). Anthra­quinones are highly effective chemotherapeutic agents with a wide spectrum of anti­tumor activity, see: Unverferth et al. (1983 ▶); Kantrowitz & Bristow (1984 ▶); Stuart et al. (1984 ▶); Arcamone (1987 ▶). For related compounds, see: Bruijnincx & Sadler (2008 ▶); Gruber et al. (2010 ▶); Neufeind et al. (2011 ▶).

Experimental

Crystal data

[Co(C15H6ClO4)2(H2O)4]·2H2O M = 738.32 Triclinic, a = 6.8655 (14) Å b = 8.1623 (16) Å c = 14.285 (3) Å α = 73.97 (3)° β = 88.86 (3)° γ = 73.35 (3)° V = 735.6 (3) Å3 Z = 1 Mo Kα radiation μ = 0.84 mm−1 T = 293 K 0.22 × 0.19 × 0.17 mm

Data collection

Rigaku MM007-HF CCD (Saturn 724+) diffractometer Absorption correction: multi-scan (ABSCOR; Higashi, 1995 ▶) T min = 0.837, T max = 0.870 7246 measured reflections 3329 independent reflections 2171 reflections with I > 2σ(I) R int = 0.041 2 standard reflections every 150 reflections intensity decay: none

Refinement

R[F 2 > 2σ(F 2)] = 0.052 wR(F 2) = 0.179 S = 1.12 3329 reflections 235 parameters 9 restraints H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.59 e Å−3 Δρmin = −0.64 e Å−3

Data collection: CrystalStructure (Rigaku/MSC, 2006 ▶); cell refinement: CrystalStructure; data reduction: CrystalStructure; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: DIAMOND (Brandenburg, 1999 ▶); software used to prepare material for publication: SHELXTL (Sheldrick, 2008 ▶). Crystal structure: contains datablock(s) I, new_global_publ_block. DOI: 10.1107/S1600536814020972/pj2015sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536814020972/pj2015Isup2.hkl Click here for additional data file. x y z . DOI: 10.1107/S1600536814020972/pj2015fig1.tif The mol­ecular structure of the title compound, with atom labels and 30% probability displacement ellipsoids. Symmetry equivalent atoms labelled with an A (eg O1A) are generated by the symmetry operator 1–x, –y, 1–z. Click here for additional data file. . DOI: 10.1107/S1600536814020972/pj2015fig2.tif A view of the crystal packing. Hydrogen bonds are shown as brown dashed lines. CCDC reference: 1025297 Additional supporting information: crystallographic information; 3D view; checkCIF report
[Co(C15H6ClO4)2(H2O)4]·2H2OZ = 1
Mr = 738.32F(000) = 377
Triclinic, P1Dx = 1.667 Mg m3
Hall symbol: -P 1Mo Kα radiation, λ = 0.71073 Å
a = 6.8655 (14) ÅCell parameters from 25 reflections
b = 8.1623 (16) Åθ = 3.1–25.0°
c = 14.285 (3) ŵ = 0.84 mm1
α = 73.97 (3)°T = 293 K
β = 88.86 (3)°Block, red
γ = 73.35 (3)°0.22 × 0.19 × 0.17 mm
V = 735.6 (3) Å3
Rigaku MM007-HF CCD (Saturn 724+) diffractometer3329 independent reflections
Radiation source: rotating anode2171 reflections with I > 2σ(I)
Confocal monochromatorRint = 0.041
ω scans at fixed χ = 45°θmax = 27.5°, θmin = 3.1°
Absorption correction: multi-scan (ABSCOR; Higashi, 1995)h = −7→8
Tmin = 0.837, Tmax = 0.870k = −10→10
7246 measured reflectionsl = −18→18
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.052Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.179H atoms treated by a mixture of independent and constrained refinement
S = 1.12w = 1/[σ2(Fo2) + (0.0859P)2 + 0.2785P] where P = (Fo2 + 2Fc2)/3
3329 reflections(Δ/σ)max < 0.001
235 parametersΔρmax = 0.59 e Å3
9 restraintsΔρmin = −0.64 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
Co10.50000.00000.50000.0521 (3)
O10.2123 (5)0.3055 (4)1.0202 (2)0.0734 (8)
O20.2651 (4)−0.0771 (3)0.76542 (19)0.0618 (7)
O30.3637 (4)0.1703 (3)0.58318 (18)0.0565 (6)
O40.0299 (4)0.1985 (4)0.5694 (2)0.0631 (7)
O50.4564 (6)−0.2191 (4)0.6077 (2)0.0798 (10)
H5A0.431 (8)−0.222 (7)0.663 (3)0.101 (9)*
H5B0.469 (8)−0.317 (5)0.607 (4)0.101 (9)*
O60.2118 (5)0.0420 (4)0.4326 (2)0.0664 (8)
H6A0.181 (8)−0.050 (6)0.442 (4)0.101 (9)*
H6B0.141 (7)0.079 (7)0.474 (3)0.101 (9)*
O70.6143 (6)0.4206 (5)0.6095 (3)0.0832 (9)
H7A0.724 (7)0.371 (10)0.591 (6)0.16 (2)*
H7B0.527 (8)0.385 (10)0.594 (6)0.16 (2)*
C10.1499 (5)0.3019 (5)0.6896 (3)0.0497 (8)
C20.0846 (6)0.4864 (5)0.6614 (3)0.0624 (10)
H20.06010.54820.59550.075*
C30.0552 (7)0.5804 (5)0.7312 (3)0.0666 (11)
H30.01030.70430.71160.080*
C40.0924 (6)0.4908 (5)0.8284 (3)0.0590 (10)
H40.07150.55410.87460.071*
C50.2727 (5)−0.0750 (5)1.0984 (3)0.0506 (8)
C60.3092 (5)−0.2598 (5)1.1281 (3)0.0583 (9)
H60.3266−0.32121.19420.070*
C70.3193 (6)−0.3514 (5)1.0589 (3)0.0619 (10)
H70.3390−0.47381.07830.074*
C80.3001 (6)−0.2605 (5)0.9614 (3)0.0562 (9)
H80.3107−0.32300.91520.067*
C90.2065 (5)0.2169 (5)0.9648 (3)0.0508 (8)
C100.2436 (5)0.0117 (5)0.8235 (3)0.0466 (8)
C110.1858 (5)0.2093 (5)0.7891 (3)0.0476 (8)
C120.1613 (5)0.3057 (5)0.8584 (3)0.0482 (8)
C130.2495 (5)0.0193 (5)1.0001 (2)0.0459 (8)
C140.2651 (5)−0.0773 (5)0.9307 (3)0.0477 (8)
C150.1838 (6)0.2122 (5)0.6087 (3)0.0525 (8)
Cl10.25829 (17)0.02230 (15)1.19317 (7)0.0696 (3)
U11U22U33U12U13U23
Co10.0629 (5)0.0479 (4)0.0531 (4)−0.0121 (3)0.0195 (3)−0.0316 (3)
O10.106 (2)0.0652 (17)0.0646 (17)−0.0219 (16)0.0088 (16)−0.0472 (14)
O20.0817 (18)0.0561 (14)0.0632 (16)−0.0195 (13)0.0199 (13)−0.0434 (12)
O30.0627 (15)0.0581 (15)0.0598 (15)−0.0146 (12)0.0214 (12)−0.0389 (12)
O40.0655 (16)0.0728 (18)0.0649 (16)−0.0171 (14)0.0081 (13)−0.0453 (14)
O50.121 (3)0.0548 (16)0.0705 (19)−0.0255 (17)0.0424 (19)−0.0311 (15)
O60.0744 (19)0.0636 (17)0.0722 (19)−0.0160 (14)0.0169 (14)−0.0419 (15)
O70.083 (2)0.065 (2)0.104 (3)−0.0127 (17)0.012 (2)−0.0370 (18)
C10.0487 (18)0.0543 (19)0.055 (2)−0.0088 (15)0.0092 (15)−0.0359 (16)
C20.076 (3)0.054 (2)0.058 (2)−0.0064 (19)0.0075 (19)−0.0311 (18)
C30.082 (3)0.050 (2)0.073 (3)−0.0062 (19)0.009 (2)−0.0377 (19)
C40.067 (2)0.056 (2)0.066 (2)−0.0103 (18)0.0129 (19)−0.0445 (19)
C50.0410 (17)0.065 (2)0.056 (2)−0.0157 (16)0.0121 (15)−0.0355 (17)
C60.054 (2)0.063 (2)0.062 (2)−0.0151 (18)0.0108 (17)−0.0269 (18)
C70.061 (2)0.055 (2)0.075 (3)−0.0146 (18)0.0123 (19)−0.0302 (19)
C80.055 (2)0.058 (2)0.070 (2)−0.0168 (17)0.0136 (18)−0.0410 (19)
C90.0468 (18)0.058 (2)0.061 (2)−0.0128 (15)0.0140 (16)−0.0421 (17)
C100.0423 (17)0.0548 (19)0.057 (2)−0.0143 (15)0.0128 (15)−0.0385 (16)
C110.0428 (17)0.0524 (18)0.060 (2)−0.0111 (15)0.0124 (15)−0.0387 (16)
C120.0446 (17)0.0546 (19)0.058 (2)−0.0133 (15)0.0136 (15)−0.0384 (16)
C130.0394 (16)0.0551 (19)0.0528 (19)−0.0117 (14)0.0112 (14)−0.0332 (16)
C140.0404 (16)0.0548 (19)0.059 (2)−0.0126 (15)0.0102 (15)−0.0346 (16)
C150.065 (2)0.0494 (19)0.0489 (19)−0.0108 (17)0.0078 (17)−0.0300 (15)
Cl10.0773 (7)0.0832 (7)0.0594 (6)−0.0203 (6)0.0136 (5)−0.0419 (5)
Co1—O3i2.083 (2)C2—H20.9300
Co1—O32.083 (2)C3—C41.369 (6)
Co1—O5i2.104 (3)C3—H30.9300
Co1—O52.104 (3)C4—C121.390 (5)
Co1—O6i2.113 (3)C4—H40.9300
Co1—O62.113 (3)C5—C131.390 (5)
O1—C91.219 (4)C5—C61.397 (5)
O2—C101.225 (4)C5—Cl11.737 (3)
O3—C151.259 (4)C6—C71.385 (5)
O4—C151.253 (4)C6—H60.9300
O5—H5A0.81 (3)C7—C81.373 (6)
O5—H5B0.78 (3)C7—H70.9300
O6—H6A0.82 (3)C8—C141.387 (5)
O6—H6B0.82 (3)C8—H80.9300
O7—H7A0.82 (3)C9—C121.487 (5)
O7—H7B0.80 (4)C9—C131.492 (5)
C1—C21.385 (5)C10—C111.485 (5)
C1—C111.402 (5)C10—C141.493 (5)
C1—C151.511 (4)C11—C121.405 (4)
C2—C31.395 (5)C13—C141.412 (4)
O3i—Co1—O3180.00 (10)C12—C4—H4119.8
O3i—Co1—O5i90.64 (11)C13—C5—C6121.2 (3)
O3—Co1—O5i89.36 (11)C13—C5—Cl1124.1 (3)
O3i—Co1—O589.36 (11)C6—C5—Cl1114.7 (3)
O3—Co1—O590.64 (11)C7—C6—C5119.8 (4)
O5i—Co1—O5180.0C7—C6—H6120.1
O3i—Co1—O6i89.78 (11)C5—C6—H6120.1
O3—Co1—O6i90.22 (11)C8—C7—C6119.7 (4)
O5i—Co1—O6i89.38 (15)C8—C7—H7120.1
O5—Co1—O6i90.62 (15)C6—C7—H7120.1
O3i—Co1—O690.22 (11)C7—C8—C14121.2 (3)
O3—Co1—O689.78 (11)C7—C8—H8119.4
O5i—Co1—O690.62 (15)C14—C8—H8119.4
O5—Co1—O689.38 (15)O1—C9—C12119.7 (3)
O6i—Co1—O6180.0O1—C9—C13121.8 (3)
C15—O3—Co1130.3 (2)C12—C9—C13118.4 (3)
Co1—O5—H5A126 (4)O2—C10—C11120.9 (3)
Co1—O5—H5B131 (4)O2—C10—C14120.3 (3)
H5A—O5—H5B103 (4)C11—C10—C14118.7 (3)
Co1—O6—H6A112 (4)C1—C11—C12119.4 (3)
Co1—O6—H6B98 (4)C1—C11—C10121.7 (3)
H6A—O6—H6B96 (4)C12—C11—C10118.9 (3)
H7A—O7—H7B110 (5)C4—C12—C11120.0 (3)
C2—C1—C11119.5 (3)C4—C12—C9117.6 (3)
C2—C1—C15116.7 (3)C11—C12—C9122.4 (3)
C11—C1—C15123.8 (3)C5—C13—C14118.0 (3)
C1—C2—C3120.6 (4)C5—C13—C9123.2 (3)
C1—C2—H2119.7C14—C13—C9118.8 (3)
C3—C2—H2119.7C8—C14—C13120.1 (3)
C4—C3—C2120.2 (4)C8—C14—C10117.9 (3)
C4—C3—H3119.9C13—C14—C10122.1 (3)
C2—C3—H3119.9O4—C15—O3126.6 (3)
C3—C4—C12120.3 (3)O4—C15—C1117.3 (3)
C3—C4—H4119.8O3—C15—C1115.9 (3)
O3i—Co1—O3—C15−8 (100)C13—C9—C12—C4170.7 (3)
O5i—Co1—O3—C15115.4 (3)O1—C9—C12—C11169.1 (3)
O5—Co1—O3—C15−64.6 (3)C13—C9—C12—C11−9.3 (5)
O6i—Co1—O3—C15−155.2 (3)C6—C5—C13—C14−0.3 (5)
O6—Co1—O3—C1524.8 (3)Cl1—C5—C13—C14180.0 (2)
C11—C1—C2—C30.3 (6)C6—C5—C13—C9178.8 (3)
C15—C1—C2—C3−178.1 (4)Cl1—C5—C13—C9−0.9 (5)
C1—C2—C3—C40.5 (7)O1—C9—C13—C58.6 (5)
C2—C3—C4—C120.5 (6)C12—C9—C13—C5−173.1 (3)
C13—C5—C6—C7−1.1 (6)O1—C9—C13—C14−172.2 (3)
Cl1—C5—C6—C7178.6 (3)C12—C9—C13—C146.1 (5)
C5—C6—C7—C82.1 (6)C7—C8—C14—C130.3 (6)
C6—C7—C8—C14−1.7 (6)C7—C8—C14—C10−179.3 (3)
C2—C1—C11—C12−2.1 (5)C5—C13—C14—C80.8 (5)
C15—C1—C11—C12176.1 (3)C9—C13—C14—C8−178.5 (3)
C2—C1—C11—C10176.2 (3)C5—C13—C14—C10−179.7 (3)
C15—C1—C11—C10−5.6 (5)C9—C13—C14—C101.1 (5)
O2—C10—C11—C11.2 (5)O2—C10—C14—C8−3.0 (5)
C14—C10—C11—C1−175.8 (3)C11—C10—C14—C8174.0 (3)
O2—C10—C11—C12179.5 (3)O2—C10—C14—C13177.4 (3)
C14—C10—C11—C122.5 (5)C11—C10—C14—C13−5.6 (5)
C3—C4—C12—C11−2.4 (6)Co1—O3—C15—O4−20.4 (6)
C3—C4—C12—C9177.6 (4)Co1—O3—C15—C1165.0 (2)
C1—C11—C12—C43.2 (5)C2—C1—C15—O4−80.0 (5)
C10—C11—C12—C4−175.2 (3)C11—C1—C15—O4101.7 (4)
C1—C11—C12—C9−176.8 (3)C2—C1—C15—O395.1 (4)
C10—C11—C12—C94.8 (5)C11—C1—C15—O3−83.2 (4)
O1—C9—C12—C4−11.0 (5)
D—H···AD—HH···AD···AD—H···A
O7—H7B···O30.80 (4)2.37 (5)3.121 (5)157 (8)
O7—H7A···O4ii0.82 (3)2.24 (4)3.049 (4)169 (8)
O6—H6B···O40.82 (3)1.92 (3)2.717 (4)164 (5)
O6—H6A···O4iii0.82 (3)2.17 (4)2.916 (4)152 (6)
O5—H5B···O7iv0.78 (3)2.08 (4)2.821 (4)159 (5)
O5—H5A···O20.81 (3)2.22 (4)2.932 (4)147 (5)
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯A D—HH⋯A DA D—H⋯A
O7—H7B⋯O30.80 (4)2.37 (5)3.121 (5)157 (8)
O7—H7A⋯O4i 0.82 (3)2.24 (4)3.049 (4)169 (8)
O6—H6B⋯O40.82 (3)1.92 (3)2.717 (4)164 (5)
O6—H6A⋯O4ii 0.82 (3)2.17 (4)2.916 (4)152 (6)
O5—H5B⋯O7iii 0.78 (3)2.08 (4)2.821 (4)159 (5)
O5—H5A⋯O20.81 (3)2.22 (4)2.932 (4)147 (5)

Symmetry codes: (i) ; (ii) ; (iii) .

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