Literature DB >> 25484665

Crystal structure of 2-ethyl-3-(4-fluoro-phenyl-sulfon-yl)-5,7-dimethyl-1-benzo-furan.

Hong Dae Choi1, Uk Lee2.   

Abstract

In the title compound, C18H17FO3S, the dihedral angle between the plane of the benzo-furan ring [r.m.s. deviation = 0.006 (1) Å] and that of the 4-fluoro-phenyl ring [r.m.s. deviation = 0.004 (1) Å] is 82.45 (4)°. In the crystal, mol-ecules are linked via three different pairs of C-H⋯O hydrogen bonds, forming chains along [001] and enclosing two R (2) 2(10) and one R (2) 2(12) ring motifs. The chains are further linked by π-π inter-actions [inter-centroid distance = 3.566 (1) Å] between the furan rings of inversion-related mol-ecules, forming a two-dimensional network lying parallel to (100).

Entities:  

Keywords:  4-fluoro­phen­yl; benzo­furan; crystal structure; hydrogen bonds; sulfon­yl; π–π inter­actions.

Year:  2014        PMID: 25484665      PMCID: PMC4257170          DOI: 10.1107/S1600536814019436

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Chemical Context

Substituted benzo­furans show important pharmacological properties such as anti­bacterial and anti­fungal, anti­tumour and anti­viral, and anti­microbial activities (Aslam et al. 2009 ▶; Galal et al., 2009 ▶; Khan et al., 2005 ▶), and are potential inhibit­ors of β-amyloid aggregation (Howlett et al., 1999 ▶; Ono et al., 2002 ▶). These benzo­furan compounds occur in a great number of natural products (Akgul & Anil, 2003 ▶; Soekamto et al., 2003 ▶). As a part of our ongoing project concerning 2-alkyl-3-(phenyl­sulfon­yl)-5,7-dimethyl-1-benzo­furan derivatives, we report herein on the synthesis and crystal structure of the title compound.

Structural commentary

In the title mol­ecule, Fig. 1 ▶, the benzo­furan unit (O1/C1–C8) is essentially planar, with a mean deviation of 0.006 (1) Å from the mean plane defined by the nine constituent atoms. The 4-fluoro­phenyl ring (C13C18) is inclined to the benzo­furan ring by 82.45 (4)°.
Figure 1

The mol­ecular structure of the title mol­ecule, with atom labelling. Displacement ellipsoids are drawn at the 50% probability level.

Supra­molecular features

In the crystal, mol­ecules are linked via three different pairs of C—H⋯O hydrogen bonds, forming chains along [001] and enclosing two (10) and one (12) ring motifs (Fig. 2 ▶ and Table 1 ▶). The chains are further linked by π–π inter­actions between the furan rings of inversion-related mol­ecules, forming a two-dimensional network lying parallel to (100) [illustrated in Fig. 2 ▶; Cg1Cg1i = 3.566 (1), inter­planar distance = 3.553 (1); slippage = 0.305 Å; Cg1 is the centroid of the C1/C2/C7/O1/C8 furan ring; symmetry code: (i) −x + 1, −y + 1, −z + 1].
Figure 2

A view of the C—H⋯O and π–π inter­actions (dotted lines) in the crystal structure of the title compound [see Table 1 ▶ for details; H atoms not involved in hydrogen bonding have been omitted for clarity; symmetry codes: (i) −x + 1, −y + 2, −z + 1; (ii) −x + 1, −y + 2, −z; (iii) −x + 1, −y + 1, −z + 1].

Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯A D—HH⋯A DA D—H⋯A
C3—H3⋯O3i 0.952.553.4804 (18)167
C14—H14⋯O2ii 0.952.493.1211 (17)124
C18—H18⋯O3i 0.952.363.2742 (17)160

Symmetry codes: (i) ; (ii) .

Database survey

A search of the Cambridge Structural Database (Version 5.35, last update May 2014; Allen, 2002 ▶) for 3-(phenyl­sulfon­yl)benzo­furan gave 65 hits. Six of these involve 5,7-dimethyl-3-(phenyl­sulfon­yl)benzo­furan derivatives. They include the 2-methyl derivative of the title compound, 2-methyl-3-(4-fluoro­phenyl­sulfon­yl)-5,7-dimethyl-1-benzo­furan (Choi et al., 2010 ▶). In these six compounds, the dihedral angle between the phenyl­sulfonyl ring and the benzo­furan ring varies from ca. 72.68° in the 2-methyl derivative mentioned above, to 87.61° in 2-methyl-3-(2-fluoro­phenyl­sulfon­yl)-5,7-dimethyl-1-benzo­furan (Choi et al., 2014 ▶). The same angle in the title compound is 82.45 (4)°.

Synthesis and crystallization

The starting material 2-ethyl-3-(4-fluoro­phenyl­sulfan­yl)-5,7-dimethyl-1-benzo­furan was prepared by a literature method (Choi et al. 1999 ▶). 3-Chloro­per­oxy­benzoic acid (77%, 448 mg, 2.0 mmol) was added in small portions to a stirred solution of 2-ethyl-3-(4-fluoro­phenyl­sulfan­yl)-5,7-dimethyl-1-benzo­furan (270 mg, 0.9 mmol) in di­chloro­methane (35 ml) at 273 K. After being stirred at room temperature for 8h, the mixture was washed with saturated sodium bicarbonate solution (2 × 15 ml) and the organic layer was separated, dried over magnesium sulfate, filtered and concentrated at reduced pressure. The residue was purified by column chromatography (hexa­ne–ethyl acetate, 4:1 v/v) to afford the title compound as a colourless solid [yield 61% (236 mg); m.p. 416–417 K; R f = 0.63 (hexa­ne–ethyl acetate, 4:1 v/v)]. Single crystals suitable for X-ray diffraction were prepared by slow evaporation of a solution of the title compound (21 mg) in acetone (15 ml) at room temperature. 1H NMR (δ p.p.m., CDCl3, 400 Hz): 7.99–8.04 (m, 2H), 7.47 (s, 1H), 7.14–7.19 (m, 2H), 6.93 (s, 1H), 3.22 (q, J = 7.52 Hz, 2H), 2.43 (s, 3H), 2.41 (s, 3H), 1.36 (t, J = 7.54 Hz, 3H).

Refinement

Crystal data, data collection and structure refinement details are summarized in Table 2 ▶. All H atoms were positioned geometrically and refined as riding atoms: C—H = 0.95 Å for aryl, 0.99 Å for methyl­ene and 0.98 Å for methyl H atoms, respectively, with U iso(H) = 1.5U eq(C) for methyl H atoms and = 1.2U eq(C) for other H atoms.
Table 2

Experimental details

Crystal data
Chemical formulaC18H17FO3S
M r 332.38
Crystal system, space groupTriclinic, P
Temperature (K)173
a, b, c (Å)8.8756 (2), 9.3917 (2), 11.0284 (2)
α, β, γ (°)65.735 (1), 80.735 (1), 71.145 (1)
V3)792.68 (3)
Z 2
Radiation typeMo Kα
μ (mm−1)0.23
Crystal size (mm)0.39 × 0.33 × 0.30
 
Data collection
DiffractometerBruker SMART APEXII CCD
Absorption correctionMulti-scan (SADABS; Bruker, 2009)
T min, T max 0.918, 0.936
No. of measured, independent and observed [I > 2σ(I)] reflections14813, 3934, 3489
R int 0.025
(sin θ/λ)max−1)0.668
 
Refinement
R[F 2 > 2σ(F 2)], wR(F 2), S 0.037, 0.108, 1.07
No. of reflections3934
No. of parameters211
H-atom treatmentH-atom parameters constrained
Δρmax, Δρmin (e Å−3)0.29, −0.44

Computer programs: APEX2 and SAINT (Bruker, 2009 ▶), SHELXS97 and SHELXL2014 (Sheldrick, 2008 ▶), ORTEP-3 for Windows (Farrugia, 2012 ▶), DIAMOND (Brandenburg, 1998 ▶) and PLATON (Spek, 2009 ▶).

Crystal structure: contains datablock(s) I. DOI: 10.1107/S1600536814019436/zp2015sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536814019436/zp2015Isup2.hkl Click here for additional data file. Supporting information file. DOI: 10.1107/S1600536814019436/zp2015Isup3.cml CCDC reference: 1021511 Additional supporting information: crystallographic information; 3D view; checkCIF report
C18H17FO3SZ = 2
Mr = 332.38F(000) = 348
Triclinic, P1Dx = 1.393 Mg m3
Hall symbol: -P 1Melting point = 417–416 K
a = 8.8756 (2) ÅMo Kα radiation, λ = 0.71073 Å
b = 9.3917 (2) ÅCell parameters from 6147 reflections
c = 11.0284 (2) Åθ = 2.4–28.2°
α = 65.735 (1)°µ = 0.23 mm1
β = 80.735 (1)°T = 173 K
γ = 71.145 (1)°Block, colourless
V = 792.68 (3) Å30.39 × 0.33 × 0.30 mm
Bruker SMART APEXII CCD diffractometer3934 independent reflections
Radiation source: rotating anode3489 reflections with I > 2σ(I)
Graphite multilayer monochromatorRint = 0.025
Detector resolution: 10.0 pixels mm-1θmax = 28.4°, θmin = 2.0°
φ and ω scansh = −11→11
Absorption correction: multi-scan (SADABS; Bruker, 2009)k = −12→12
Tmin = 0.918, Tmax = 0.936l = −14→14
14813 measured reflections
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.037Hydrogen site location: difference Fourier map
wR(F2) = 0.108H-atom parameters constrained
S = 1.07w = 1/[σ2(Fo2) + (0.0587P)2 + 0.2229P] where P = (Fo2 + 2Fc2)/3
3934 reflections(Δ/σ)max < 0.001
211 parametersΔρmax = 0.29 e Å3
0 restraintsΔρmin = −0.44 e Å3
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2sigma(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
S10.47686 (4)0.90767 (4)0.29373 (3)0.02612 (11)
F10.95796 (13)1.25062 (13)0.04333 (11)0.0519 (3)
O10.69433 (12)0.44317 (12)0.38093 (10)0.0329 (2)
O20.37720 (12)0.93598 (13)0.19098 (10)0.0339 (2)
O30.40523 (12)0.95254 (13)0.40432 (10)0.0331 (2)
C10.58429 (16)0.70342 (16)0.35637 (13)0.0268 (3)
C20.68621 (15)0.62616 (16)0.46953 (13)0.0274 (3)
C30.72804 (16)0.67484 (18)0.55984 (13)0.0300 (3)
H30.68400.78340.55550.036*
C40.83619 (17)0.5600 (2)0.65658 (14)0.0343 (3)
C50.89864 (17)0.40020 (19)0.66131 (15)0.0374 (3)
H50.97240.32410.72820.045*
C60.85859 (17)0.34717 (18)0.57367 (15)0.0352 (3)
C70.75119 (16)0.46619 (17)0.47913 (14)0.0304 (3)
C80.59290 (16)0.58923 (17)0.30738 (14)0.0296 (3)
C90.8875 (2)0.6073 (2)0.75486 (16)0.0472 (4)
H9A0.82990.72120.73980.071*
H9B1.00230.59460.74320.071*
H9C0.86360.53700.84560.071*
C100.9270 (2)0.17627 (19)0.57832 (19)0.0461 (4)
H10A0.85230.15030.53970.069*
H10B0.94490.09980.67100.069*
H10C1.02840.16730.52730.069*
C110.52011 (18)0.58876 (19)0.19537 (15)0.0364 (3)
H11A0.41810.67640.17470.044*
H11B0.49620.48360.22330.044*
C120.6270 (2)0.6136 (2)0.06985 (16)0.0425 (4)
H12A0.64190.72250.03610.064*
H12B0.57720.60310.00200.064*
H12C0.73070.53110.09070.064*
C130.62269 (16)1.01143 (16)0.21923 (13)0.0261 (3)
C140.68862 (17)1.01386 (17)0.09555 (13)0.0306 (3)
H140.65620.95960.05270.037*
C150.80202 (18)1.09615 (19)0.03520 (14)0.0348 (3)
H150.84851.0998−0.04950.042*
C160.84549 (18)1.17233 (17)0.10114 (15)0.0349 (3)
C170.7805 (2)1.17300 (18)0.22324 (15)0.0363 (3)
H170.81301.22830.26500.044*
C180.66666 (17)1.09115 (17)0.28363 (14)0.0307 (3)
H180.61941.08950.36770.037*
U11U22U33U12U13U23
S10.02580 (17)0.02980 (17)0.02171 (17)−0.00369 (12)−0.00149 (12)−0.01186 (13)
F10.0532 (6)0.0496 (6)0.0541 (6)−0.0289 (5)0.0052 (5)−0.0128 (5)
O10.0315 (5)0.0285 (5)0.0380 (5)−0.0076 (4)0.0000 (4)−0.0131 (4)
O20.0317 (5)0.0415 (6)0.0287 (5)−0.0063 (4)−0.0073 (4)−0.0145 (4)
O30.0316 (5)0.0399 (5)0.0275 (5)−0.0046 (4)0.0029 (4)−0.0185 (4)
C10.0262 (6)0.0289 (6)0.0241 (6)−0.0070 (5)0.0012 (5)−0.0104 (5)
C20.0243 (6)0.0301 (6)0.0240 (6)−0.0092 (5)0.0027 (5)−0.0069 (5)
C30.0280 (6)0.0354 (7)0.0243 (6)−0.0101 (5)0.0016 (5)−0.0092 (5)
C40.0288 (7)0.0445 (8)0.0244 (6)−0.0135 (6)0.0014 (5)−0.0067 (6)
C50.0288 (7)0.0398 (8)0.0293 (7)−0.0094 (6)−0.0023 (6)0.0008 (6)
C60.0271 (7)0.0299 (7)0.0371 (8)−0.0084 (5)0.0021 (6)−0.0028 (6)
C70.0265 (6)0.0307 (7)0.0303 (7)−0.0100 (5)0.0028 (5)−0.0081 (5)
C80.0266 (6)0.0313 (6)0.0306 (7)−0.0084 (5)0.0018 (5)−0.0124 (6)
C90.0453 (9)0.0623 (11)0.0312 (8)−0.0132 (8)−0.0081 (7)−0.0144 (8)
C100.0366 (8)0.0301 (7)0.0568 (10)−0.0065 (6)−0.0028 (7)−0.0042 (7)
C110.0357 (7)0.0402 (8)0.0403 (8)−0.0100 (6)−0.0021 (6)−0.0226 (7)
C120.0564 (10)0.0399 (8)0.0350 (8)−0.0134 (7)−0.0004 (7)−0.0187 (7)
C130.0284 (6)0.0242 (6)0.0225 (6)−0.0029 (5)−0.0030 (5)−0.0086 (5)
C140.0339 (7)0.0341 (7)0.0252 (6)−0.0077 (6)−0.0014 (5)−0.0139 (6)
C150.0358 (7)0.0366 (7)0.0279 (7)−0.0081 (6)0.0023 (6)−0.0114 (6)
C160.0339 (7)0.0274 (6)0.0368 (8)−0.0090 (6)−0.0029 (6)−0.0052 (6)
C170.0464 (8)0.0290 (7)0.0359 (8)−0.0101 (6)−0.0072 (6)−0.0133 (6)
C180.0382 (7)0.0281 (6)0.0253 (6)−0.0055 (5)−0.0033 (5)−0.0121 (5)
S1—O21.4353 (10)C9—H9B0.9800
S1—O31.4383 (10)C9—H9C0.9800
S1—C11.7341 (14)C10—H10A0.9800
S1—C131.7648 (14)C10—H10B0.9800
F1—C161.3520 (17)C10—H10C0.9800
O1—C81.3684 (17)C11—C121.525 (2)
O1—C71.3833 (18)C11—H11A0.9900
C1—C81.3630 (19)C11—H11B0.9900
C1—C21.4482 (18)C12—H12A0.9800
C2—C71.3892 (19)C12—H12B0.9800
C2—C31.3935 (19)C12—H12C0.9800
C3—C41.392 (2)C13—C141.3891 (18)
C3—H30.9500C13—C181.3901 (19)
C4—C51.403 (2)C14—C151.385 (2)
C4—C91.505 (2)C14—H140.9500
C5—C61.389 (2)C15—C161.373 (2)
C5—H50.9500C15—H150.9500
C6—C71.385 (2)C16—C171.379 (2)
C6—C101.503 (2)C17—C181.385 (2)
C8—C111.485 (2)C17—H170.9500
C9—H9A0.9800C18—H180.9500
O2—S1—O3119.08 (6)C6—C10—H10A109.5
O2—S1—C1108.98 (6)C6—C10—H10B109.5
O3—S1—C1108.06 (6)H10A—C10—H10B109.5
O2—S1—C13108.05 (6)C6—C10—H10C109.5
O3—S1—C13107.27 (6)H10A—C10—H10C109.5
C1—S1—C13104.43 (6)H10B—C10—H10C109.5
C8—O1—C7107.20 (11)C8—C11—C12113.00 (13)
C8—C1—C2108.02 (12)C8—C11—H11A109.0
C8—C1—S1127.10 (11)C12—C11—H11A109.0
C2—C1—S1124.84 (10)C8—C11—H11B109.0
C7—C2—C3119.68 (13)C12—C11—H11B109.0
C7—C2—C1104.35 (12)H11A—C11—H11B107.8
C3—C2—C1135.96 (13)C11—C12—H12A109.5
C4—C3—C2118.14 (14)C11—C12—H12B109.5
C4—C3—H3120.9H12A—C12—H12B109.5
C2—C3—H3120.9C11—C12—H12C109.5
C3—C4—C5119.77 (15)H12A—C12—H12C109.5
C3—C4—C9120.17 (15)H12B—C12—H12C109.5
C5—C4—C9120.05 (14)C14—C13—C18121.55 (13)
C6—C5—C4123.62 (14)C14—C13—S1118.74 (10)
C6—C5—H5118.2C18—C13—S1119.70 (10)
C4—C5—H5118.2C15—C14—C13119.42 (13)
C7—C6—C5114.32 (14)C15—C14—H14120.3
C7—C6—C10122.25 (15)C13—C14—H14120.3
C5—C6—C10123.43 (14)C16—C15—C14118.19 (13)
O1—C7—C6125.00 (14)C16—C15—H15120.9
O1—C7—C2110.53 (12)C14—C15—H15120.9
C6—C7—C2124.47 (14)F1—C16—C15118.29 (14)
C1—C8—O1109.89 (12)F1—C16—C17118.31 (14)
C1—C8—C11135.05 (13)C15—C16—C17123.41 (14)
O1—C8—C11115.06 (12)C16—C17—C18118.51 (13)
C4—C9—H9A109.5C16—C17—H17120.7
C4—C9—H9B109.5C18—C17—H17120.7
H9A—C9—H9B109.5C17—C18—C13118.92 (13)
C4—C9—H9C109.5C17—C18—H18120.5
H9A—C9—H9C109.5C13—C18—H18120.5
H9B—C9—H9C109.5
O2—S1—C1—C88.30 (15)C3—C2—C7—C6−0.5 (2)
O3—S1—C1—C8139.05 (12)C1—C2—C7—C6179.20 (13)
C13—S1—C1—C8−106.97 (13)C2—C1—C8—O1−0.30 (15)
O2—S1—C1—C2−173.96 (10)S1—C1—C8—O1177.75 (9)
O3—S1—C1—C2−43.20 (13)C2—C1—C8—C11−179.77 (15)
C13—S1—C1—C270.78 (12)S1—C1—C8—C11−1.7 (2)
C8—C1—C2—C70.46 (14)C7—O1—C8—C10.01 (15)
S1—C1—C2—C7−177.64 (10)C7—O1—C8—C11179.60 (11)
C8—C1—C2—C3−179.96 (15)C1—C8—C11—C1295.6 (2)
S1—C1—C2—C31.9 (2)O1—C8—C11—C12−83.88 (16)
C7—C2—C3—C40.70 (19)O2—S1—C13—C14−38.40 (12)
C1—C2—C3—C4−178.83 (14)O3—S1—C13—C14−167.95 (10)
C2—C3—C4—C5−0.4 (2)C1—S1—C13—C1477.52 (12)
C2—C3—C4—C9178.89 (13)O2—S1—C13—C18140.33 (11)
C3—C4—C5—C6−0.1 (2)O3—S1—C13—C1810.79 (13)
C9—C4—C5—C6−179.43 (14)C1—S1—C13—C18−103.75 (12)
C4—C5—C6—C70.4 (2)C18—C13—C14—C150.6 (2)
C4—C5—C6—C10179.40 (14)S1—C13—C14—C15179.36 (11)
C8—O1—C7—C6−179.37 (13)C13—C14—C15—C160.2 (2)
C8—O1—C7—C20.30 (15)C14—C15—C16—F1179.00 (13)
C5—C6—C7—O1179.55 (12)C14—C15—C16—C17−1.0 (2)
C10—C6—C7—O10.5 (2)F1—C16—C17—C18−179.19 (13)
C5—C6—C7—C2−0.1 (2)C15—C16—C17—C180.8 (2)
C10—C6—C7—C2−179.13 (13)C16—C17—C18—C130.1 (2)
C3—C2—C7—O1179.87 (11)C14—C13—C18—C17−0.8 (2)
C1—C2—C7—O1−0.47 (14)S1—C13—C18—C17−179.53 (11)
D—H···AD—HH···AD···AD—H···A
C3—H3···O3i0.952.553.4804 (18)167
C14—H14···O2ii0.952.493.1211 (17)124
C18—H18···O3i0.952.363.2742 (17)160
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Journal:  Nucl Med Biol       Date:  2002-08       Impact factor: 2.408

7.  Synthesis of potent antitumor and antiviral benzofuran derivatives.

Authors:  Shadia A Galal; Amira S Abd El-All; Mohamed M Abdallah; Hoda I El-Diwani
Journal:  Bioorg Med Chem Lett       Date:  2009-03-21       Impact factor: 2.823

8.  Antibacterial and antifungal activity of cicerfuran and related 2-arylbenzofurans and stilbenes.

Authors:  Shazia N Aslam; Philip C Stevenson; Tetsuo Kokubun; David R Hall
Journal:  Microbiol Res       Date:  2007-04-05       Impact factor: 5.415

9.  3-(2-Fluoro-phenyl-sulfon-yl)-2,5,7-trimethyl-1-benzo-furan.

Authors:  Hong Dae Choi; Pil Ja Seo; Uk Lee
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2014-04-16

10.  Structure validation in chemical crystallography.

Authors:  Anthony L Spek
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2009-01-20
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