Literature DB >> 25484216

Crystallization and preliminary X-ray diffraction analysis of UspE from Escherichia coli.

Yongbin Xu1, Chun Shan Quan1, Xuanzhen Jin2, Xiaoling Jin1, Jing Zhao1, Xihui Li3, Wei Zheng1, Liming Jin1, Dedi Liu4, Shengdi Fan1, Nam Chul Ha5.   

Abstract

Universal stress proteins (Usps) are among the most highly induced genes when bacteria are subjected to several stress conditions such as heat shock, nutrient starvation or the presence of oxidants or other stress agents. Escherichia coli has five small Usps and one tandem-type Usp. UspE (or YdaA) is the tandem-type Usp and consists of two Usp domains arranged in tandem. To date, the structure of UspE remains to be elucidated. To contribute to the molecular understanding of the function of the tandem-type UspE, UspE from E. coli was overexpressed and the recombinant protein was purified using Ni-NTA affinity, Q anion-exchange and gel-filtration chromatography. Crystals of UspE were obtained by sitting-drop vapour diffusion. A diffraction data set was collected to a resolution of 3.2 Å from flash-cooled crystals. The crystals belonged to the tetragonal space group I4122 or I4322, with unit-cell parameters a = b = 121.1, c = 241.7 Å.

Entities:  

Keywords:  Usp domain; tandem-type UspE; universal stress proteins

Mesh:

Substances:

Year:  2014        PMID: 25484216      PMCID: PMC4259230          DOI: 10.1107/S2053230X14023437

Source DB:  PubMed          Journal:  Acta Crystallogr F Struct Biol Commun        ISSN: 2053-230X            Impact factor:   1.056


  11 in total

1.  The universal stress protein A of Escherichia coli is required for resistance to DNA damaging agents and is regulated by a RecA/FtsK-dependent regulatory pathway.

Authors:  A Diez; N Gustavsson; T Nyström
Journal:  Mol Microbiol       Date:  2000-06       Impact factor: 3.501

2.  Structure of the universal stress protein of Haemophilus influenzae.

Authors:  M C Sousa; D B McKay
Journal:  Structure       Date:  2001-12       Impact factor: 5.006

3.  Universal stress proteins in Escherichia coli.

Authors:  Deborah A Siegele
Journal:  J Bacteriol       Date:  2005-09       Impact factor: 3.490

4.  Differential roles of the universal stress proteins of Escherichia coli in oxidative stress resistance, adhesion, and motility.

Authors:  Laurence Nachin; Ulf Nannmark; Thomas Nyström
Journal:  J Bacteriol       Date:  2005-09       Impact factor: 3.490

5.  Structure-based assignment of the biochemical function of a hypothetical protein: a test case of structural genomics.

Authors:  T I Zarembinski; L W Hung; H J Mueller-Dieckmann; K K Kim; H Yokota; R Kim; S H Kim
Journal:  Proc Natl Acad Sci U S A       Date:  1998-12-22       Impact factor: 11.205

6.  iMOSFLM: a new graphical interface for diffraction-image processing with MOSFLM.

Authors:  T Geoff G Battye; Luke Kontogiannis; Owen Johnson; Harold R Powell; Andrew G W Leslie
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2011-03-18

Review 7.  The bacterial universal stress protein: function and regulation.

Authors:  Kristian Kvint; Laurence Nachin; Alfredo Diez; Thomas Nyström
Journal:  Curr Opin Microbiol       Date:  2003-04       Impact factor: 7.934

8.  Expression and role of the universal stress protein, UspA, of Escherichia coli during growth arrest.

Authors:  T Nyström; F C Neidhardt
Journal:  Mol Microbiol       Date:  1994-02       Impact factor: 3.501

9.  Structural and functional insight into the universal stress protein family.

Authors:  Karolina L Tkaczuk; Igor A Shumilin; Maksymilian Chruszcz; Elena Evdokimova; Alexei Savchenko; Wladek Minor
Journal:  Evol Appl       Date:  2013-03-13       Impact factor: 5.183

10.  Overview of the CCP4 suite and current developments.

Authors:  Martyn D Winn; Charles C Ballard; Kevin D Cowtan; Eleanor J Dodson; Paul Emsley; Phil R Evans; Ronan M Keegan; Eugene B Krissinel; Andrew G W Leslie; Airlie McCoy; Stuart J McNicholas; Garib N Murshudov; Navraj S Pannu; Elizabeth A Potterton; Harold R Powell; Randy J Read; Alexei Vagin; Keith S Wilson
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2011-03-18
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  2 in total

1.  Crystal structure and functional implications of the tandem-type universal stress protein UspE from Escherichia coli.

Authors:  Yongbin Xu; Jianyun Guo; Xiaoling Jin; Jin-Sik Kim; Ying Ji; Shengdi Fan; Nam-Chul Ha; Chun-Shan Quan
Journal:  BMC Struct Biol       Date:  2016-02-11

2.  Characterization of the universal stress protein F from atypical enteropathogenic Escherichia coli and its prevalence in Enterobacteriaceae.

Authors:  Cristiane S de Souza; Alfredo G Torres; Andressa Caravelli; Anderson Silva; Juliana M Polatto; Roxane M F Piazza
Journal:  Protein Sci       Date:  2016-09-23       Impact factor: 6.725

  2 in total

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