Literature DB >> 25484213

Crystallization and preliminary X-ray diffraction analysis of a trimodular endo-β-1,4-glucanase (Cel5B) from Bacillus halodurans.

Immacolata Venditto1, Helena Santos1, James Sandy2, Juan Sanchez-Weatherby2, Luis M A Ferreira1, Kazuo Sakka3, Carlos M G A Fontes1, Shabir Najmudin1.   

Abstract

Cellulases catalyze the hydrolysis of cellulose, the major constituent of plant biomass and the most abundant organic polymer on earth. Cellulases are modular enzymes containing catalytic domains connected, via linker sequences, to noncatalytic carbohydrate-binding modules (CBMs). A putative modular endo-β-1,4-glucanase (BhCel5B) is encoded at locus BH0603 in the genome of Bacillus halodurans. It is composed of an N-terminal glycoside hydrolase family 5 catalytic module (GH5) followed by an immunoglobulin-like module and a C-terminal family 46 CBM (BhCBM46). Here, the crystallization and preliminary X-ray diffraction analysis of the trimodular BhCel5B are reported. The crystals of BhCel5B belonged to the orthorhombic space group P2121 2 and data were processed to a resolution of 1.64 Å. A molecular-replacement solution has been found.

Entities:  

Keywords:  Bacillus halodurans; endo-β-1,4-glucanase Cel5B; family 46 carbohydrate-binding module (CBM46); family 5 glycoside hydrolase (GH5); plant cell-wall degradation

Mesh:

Substances:

Year:  2014        PMID: 25484213      PMCID: PMC4259227          DOI: 10.1107/S2053230X1402319X

Source DB:  PubMed          Journal:  Acta Crystallogr F Struct Biol Commun        ISSN: 2053-230X            Impact factor:   1.056


  22 in total

1.  Essentiality of a newly identified carbohydrate-binding module for the function of CelB (BH0603) from the alkaliphilic bacterium Bacillus halodurans.

Authors:  Benson Munyali Wamalwa; Makiko Sakka; Paul Mwanza Shiundu; Kunio Ohmiya; Tetsuya Kimura; Kazuo Sakka
Journal:  Appl Environ Microbiol       Date:  2006-09-01       Impact factor: 4.792

2.  Automated data collection for macromolecular crystallography.

Authors:  Graeme Winter; Katherine E McAuley
Journal:  Methods       Date:  2011-07-07       Impact factor: 3.608

3.  Overproduction, purification, crystallization and preliminary X-ray characterization of the family 46 carbohydrate-binding module (CBM46) of endo-β-1,4-glucanase B (CelB) from Bacillus halodurans.

Authors:  Immacolata Venditto; Helena Santos; Luís M A Ferreira; Kazuo Sakka; Carlos M G A Fontes; Shabir Najmudin
Journal:  Acta Crystallogr F Struct Biol Commun       Date:  2014-05-10       Impact factor: 1.056

4.  Solvent content of protein crystals.

Authors:  B W Matthews
Journal:  J Mol Biol       Date:  1968-04-28       Impact factor: 5.469

5.  iMOSFLM: a new graphical interface for diffraction-image processing with MOSFLM.

Authors:  T Geoff G Battye; Luke Kontogiannis; Owen Johnson; Harold R Powell; Andrew G W Leslie
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2011-03-18

Review 6.  Scaling and assessment of data quality.

Authors:  Philip Evans
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2005-12-14

7.  Decision making in xia2.

Authors:  Graeme Winter; Carina M C Lobley; Stephen M Prince
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2013-06-18

8.  Better models by discarding data?

Authors:  K Diederichs; P A Karplus
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2013-06-15

9.  Overview of the CCP4 suite and current developments.

Authors:  Martyn D Winn; Charles C Ballard; Kevin D Cowtan; Eleanor J Dodson; Paul Emsley; Phil R Evans; Ronan M Keegan; Eugene B Krissinel; Andrew G W Leslie; Airlie McCoy; Stuart J McNicholas; Garib N Murshudov; Navraj S Pannu; Elizabeth A Potterton; Harold R Powell; Randy J Read; Alexei Vagin; Keith S Wilson
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2011-03-18

10.  BALBES: a molecular-replacement pipeline.

Authors:  Fei Long; Alexei A Vagin; Paul Young; Garib N Murshudov
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2007-12-05
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  2 in total

1.  Family 46 Carbohydrate-binding Modules Contribute to the Enzymatic Hydrolysis of Xyloglucan and β-1,3-1,4-Glucans through Distinct Mechanisms.

Authors:  Immacolata Venditto; Shabir Najmudin; Ana S Luís; Luís M A Ferreira; Kazuo Sakka; J Paul Knox; Harry J Gilbert; Carlos M G A Fontes
Journal:  J Biol Chem       Date:  2015-02-23       Impact factor: 5.157

2.  Thermotolerant glycosyl hydrolases-producing Bacillus aerius CMCPS1 and its saccharification efficiency on HCR-laccase (LccH)-pretreated corncob biomass.

Authors:  Meena Ganesan; Remitha Mathivani Vinayakamoorthy; Sugitha Thankappan; Iniyakumar Muniraj; Sivakumar Uthandi
Journal:  Biotechnol Biofuels       Date:  2020-07-14       Impact factor: 6.040

  2 in total

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