Literature DB >> 25482540

FadA5 a thiolase from Mycobacterium tuberculosis: a steroid-binding pocket reveals the potential for drug development against tuberculosis.

Christin M Schaefer1, Rui Lu2, Natasha M Nesbitt2, Johannes Schiebel3, Nicole S Sampson4, Caroline Kisker5.   

Abstract

With the exception of HIV, tuberculosis (TB) is the leading cause of mortality among infectious diseases. The urgent need to develop new antitubercular drugs is apparent due to the increasing number of drug-resistant Mycobacterium tuberculosis (Mtb) strains. Proteins involved in cholesterol import and metabolism have recently been discovered as potent targets against TB. FadA5, a thiolase from Mtb, is catalyzing the last step of the β-oxidation reaction of the cholesterol side-chain degradation under release of critical metabolites and was shown to be of importance during the chronic stage of TB infections. To gain structural and mechanistic insight on FadA5, we characterized the enzyme in different stages of the cleavage reaction and with a steroid bound to the binding pocket. Structural comparisons to human thiolases revealed that it should be possible to target FadA5 specifically, and the steroid-bound structure provides a solid basis for the development of inhibitors against FadA5.
Copyright © 2015 Elsevier Ltd. All rights reserved.

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Year:  2014        PMID: 25482540      PMCID: PMC4286435          DOI: 10.1016/j.str.2014.10.010

Source DB:  PubMed          Journal:  Structure        ISSN: 0969-2126            Impact factor:   5.006


  43 in total

1.  PRODRG: a tool for high-throughput crystallography of protein-ligand complexes.

Authors:  Alexander W Schüttelkopf; Daan M F van Aalten
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2004-07-21

2.  DSX: a knowledge-based scoring function for the assessment of protein-ligand complexes.

Authors:  Gerd Neudert; Gerhard Klebe
Journal:  J Chem Inf Model       Date:  2011-10-04       Impact factor: 4.956

Review 3.  The thiolase superfamily: condensing enzymes with diverse reaction specificities.

Authors:  Antti M Haapalainen; Gitte Meriläinen; Rik K Wierenga
Journal:  Trends Biochem Sci       Date:  2005-12-13       Impact factor: 13.807

4.  Mycobacterium tuberculosis genes induced during infection of human macrophages.

Authors:  Eugenie Dubnau; Patricia Fontán; Riccardo Manganelli; Sonia Soares-Appel; Issar Smith
Journal:  Infect Immun       Date:  2002-06       Impact factor: 3.441

5.  Crystallographic analysis of the reaction pathway of Zoogloea ramigera biosynthetic thiolase.

Authors:  Y Modis; R K Wierenga
Journal:  J Mol Biol       Date:  2000-04-14       Impact factor: 5.469

6.  The kinetic mechanism and properties of the cytoplasmic acetoacetyl-coenzyme A thiolase from rat liver.

Authors:  B Middleton
Journal:  Biochem J       Date:  1974-04       Impact factor: 3.857

Review 7.  Scaling and assessment of data quality.

Authors:  Philip Evans
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2005-12-14

8.  Studies of a ring-cleaving dioxygenase illuminate the role of cholesterol metabolism in the pathogenesis of Mycobacterium tuberculosis.

Authors:  Katherine C Yam; Igor D'Angelo; Rainer Kalscheuer; Haizhong Zhu; Jian-Xin Wang; Victor Snieckus; Lan H Ly; Paul J Converse; William R Jacobs; Natalie Strynadka; Lindsay D Eltis
Journal:  PLoS Pathog       Date:  2009-03-20       Impact factor: 6.823

9.  MolProbity: all-atom structure validation for macromolecular crystallography.

Authors:  Vincent B Chen; W Bryan Arendall; Jeffrey J Headd; Daniel A Keedy; Robert M Immormino; Gary J Kapral; Laura W Murray; Jane S Richardson; David C Richardson
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2009-12-21

10.  Phaser crystallographic software.

Authors:  Airlie J McCoy; Ralf W Grosse-Kunstleve; Paul D Adams; Martyn D Winn; Laurent C Storoni; Randy J Read
Journal:  J Appl Crystallogr       Date:  2007-07-13       Impact factor: 3.304

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  18 in total

1.  Designing novel inhibitors against Mycobacterium tuberculosis FadA5 (acetyl-CoA acetyltransferase) by virtual screening of known anti-tuberculosis (bioactive) compounds.

Authors:  Atul Kumar Jaiswal; Syed Hussain Abbas Husaini; Amarjeet Kumar; Naidu Subbarao
Journal:  Bioinformation       Date:  2018-06-30

2.  The steroid side-chain-cleaving aldolase Ltp2-ChsH2DUF35 is a thiolase superfamily member with a radically repurposed active site.

Authors:  Rebecca Aggett; Evan Mallette; Stephanie E Gilbert; Melody A Vachon; Kurt L Schroeter; Matthew S Kimber; Stephen Y K Seah
Journal:  J Biol Chem       Date:  2019-06-16       Impact factor: 5.157

3.  Coenzyme A-free activity, crystal structure, and rational engineering of a promiscuous β-ketoacyl thiolase from Ralstonia eutropha.

Authors:  Christopher D Fage; Jessica L Meinke; Adrian T Keatinge-Clay
Journal:  J Mol Catal B Enzym       Date:  2015-11-01

4.  Mycobacterium tuberculosis Exploits a Heterohexameric Enoyl-CoA Hydratase Retro-Aldolase Complex for Cholesterol Catabolism.

Authors:  Tianao Yuan; Meng Yang; Kalle Gehring; Nicole S Sampson
Journal:  Biochemistry       Date:  2019-10-07       Impact factor: 3.162

5.  IpdAB, a virulence factor in Mycobacterium tuberculosis, is a cholesterol ring-cleaving hydrolase.

Authors:  Adam M Crowe; Sean D Workman; Nobuhiko Watanabe; Liam J Worrall; Natalie C J Strynadka; Lindsay D Eltis
Journal:  Proc Natl Acad Sci U S A       Date:  2018-03-26       Impact factor: 11.205

6.  Characterization of an Aldolase Involved in Cholesterol Side Chain Degradation in Mycobacterium tuberculosis.

Authors:  Stephanie Gilbert; LaChae Hood; Stephen Y K Seah
Journal:  J Bacteriol       Date:  2017-12-20       Impact factor: 3.490

7.  α-Methyl Acyl CoA Racemase Provides Mycobacterium tuberculosis Catabolic Access to Cholesterol Esters.

Authors:  Rui Lu; Werner Schmitz; Nicole S Sampson
Journal:  Biochemistry       Date:  2015-09-11       Impact factor: 3.162

Review 8.  Cholesterol metabolism: a potential therapeutic target in Mycobacteria.

Authors:  Areej Abuhammad
Journal:  Br J Pharmacol       Date:  2017-01-24       Impact factor: 8.739

9.  Post-translational Succinylation of Mycobacterium tuberculosis Enoyl-CoA Hydratase EchA19 Slows Catalytic Hydration of Cholesterol Catabolite 3-Oxo-chol-4,22-diene-24-oyl-CoA.

Authors:  Amber C Bonds; Tianao Yuan; Joshua M Werman; Jungwon Jang; Rui Lu; Natasha M Nesbitt; Miguel Garcia-Diaz; Nicole S Sampson
Journal:  ACS Infect Dis       Date:  2020-07-27       Impact factor: 5.084

10.  Unraveling Cholesterol Catabolism in Mycobacterium tuberculosis: ChsE4-ChsE5 α2β2 Acyl-CoA Dehydrogenase Initiates β-Oxidation of 3-Oxo-cholest-4-en-26-oyl CoA.

Authors:  Meng Yang; Rui Lu; Kip E Guja; Matthew F Wipperman; Johnna R St Clair; Amber C Bonds; Miguel Garcia-Diaz; Nicole S Sampson
Journal:  ACS Infect Dis       Date:  2015-01-08       Impact factor: 5.084

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