Literature DB >> 25482231

Transcription regulation mechanisms of bacteriophages: recent advances and future prospects.

Haiquan Yang1, Yingfang Ma, Yitian Wang, Haixia Yang, Wei Shen, Xianzhong Chen.   

Abstract

Phage diversity significantly contributes to ecology and evolution of new bacterial species through horizontal gene transfer. Therefore, it is essential to understand the mechanisms underlying phage-host interactions. After initial infection, the phage utilizes the transcriptional machinery of the host to direct the expression of its own genes. This review presents a view on the transcriptional regulation mechanisms of bacteriophages, and its contribution to phage diversity and classification. Through this review, we aim to broaden the understanding of phage-host interactions while providing a reference source for researchers studying the regulation of phage transcription.

Keywords:  RNA polymerase; bacteriophages; promoter; regulation mechanism; transcription

Mesh:

Substances:

Year:  2014        PMID: 25482231      PMCID: PMC4156491          DOI: 10.4161/bioe.32110

Source DB:  PubMed          Journal:  Bioengineered        ISSN: 2165-5979            Impact factor:   3.269


  41 in total

Review 1.  Transcriptional takeover by sigma appropriation: remodelling of the sigma70 subunit of Escherichia coli RNA polymerase by the bacteriophage T4 activator MotA and co-activator AsiA.

Authors:  Deborah M Hinton; Suchira Pande; Neelowfar Wais; Xanthia B Johnson; Madhavi Vuthoori; Anna Makela; India Hook-Barnard
Journal:  Microbiology       Date:  2005-06       Impact factor: 2.777

2.  Phage HK022 Nun protein represses translation of phage lambda N (transcription termination/translation repression).

Authors:  Hyeong C Kim; Jian-guang Zhou; Helen R Wilson; Grigoriy Mogilnitskiy; Donald L Court; Max E Gottesman
Journal:  Proc Natl Acad Sci U S A       Date:  2003-04-08       Impact factor: 11.205

3.  Bacteriophage T4 MotA activator and the β-flap tip of RNA polymerase target the same set of σ70 carboxyl-terminal residues.

Authors:  Richard P Bonocora; Phillip K Decker; Stephanie Glass; Leslie Knipling; Deborah M Hinton
Journal:  J Biol Chem       Date:  2011-09-12       Impact factor: 5.157

4.  Temporal regulation of viral transcription during development of Thermus thermophilus bacteriophage phiYS40.

Authors:  Anastasiya Sevostyanova; Marko Djordjevic; Konstantin Kuznedelov; Tatyana Naryshkina; Mikhail S Gelfand; Konstantin Severinov; Leonid Minakhin
Journal:  J Mol Biol       Date:  2006-11-18       Impact factor: 5.469

5.  Role of an RNase III binding site in transcription termination at lambda nutL by HK022 Nun protein.

Authors:  Robert S Washburn; Donald L Court; Max E Gottesman
Journal:  J Bacteriol       Date:  2006-10       Impact factor: 3.490

6.  The role of the T7 Gp2 inhibitor of host RNA polymerase in phage development.

Authors:  Dhruti Savalia; William Robins; Sergei Nechaev; Ian Molineux; Konstantin Severinov
Journal:  J Mol Biol       Date:  2010-07-19       Impact factor: 5.469

7.  Architecture of the bacteriophage T4 activator MotA/promoter DNA interaction during sigma appropriation.

Authors:  Meng-Lun Hsieh; Tamara D James; Leslie Knipling; M Brett Waddell; Stephen White; Deborah M Hinton
Journal:  J Biol Chem       Date:  2013-07-31       Impact factor: 5.157

8.  The genome and structural proteome of YuA, a new Pseudomonas aeruginosa phage resembling M6.

Authors:  Pieter-Jan Ceyssens; Vadim Mesyanzhinov; Nina Sykilinda; Yves Briers; Bart Roucourt; Rob Lavigne; Johan Robben; Artem Domashin; Konstantin Miroshnikov; Guido Volckaert; Kirsten Hertveldt
Journal:  J Bacteriol       Date:  2007-12-07       Impact factor: 3.490

9.  A T3 and T7 recombinant phage acquires efficient adsorption and a broader host range.

Authors:  Tiao-Yin Lin; Yi-Haw Lo; Pin-Wei Tseng; Shun-Fu Chang; Yann-Tsyr Lin; Ton-Seng Chen
Journal:  PLoS One       Date:  2012-02-09       Impact factor: 3.240

10.  Overexpression of Escherichia coli udk mimics the absence of T7 Gp2 function and thereby abrogates successful infection by T7 phage.

Authors:  Andrey Shadrin; Carol Sheppard; Dhruti Savalia; Konstantin Severinov; Sivaramesh Wigneshweraraj
Journal:  Microbiology (Reading)       Date:  2012-12-14       Impact factor: 2.777

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  11 in total

Review 1.  Viral interference of the bacterial RNA metabolism machinery.

Authors:  Tom Dendooven; An Van den Bossche; Hanne Hendrix; Pieter-Jan Ceyssens; Marleen Voet; K J Bandyra; Marc De Maeyer; Abram Aertsen; Jean-Paul Noben; Steven W Hardwick; Ben F Luisi; Rob Lavigne
Journal:  RNA Biol       Date:  2016-11-11       Impact factor: 4.652

2.  Engineering a Dynamic Controllable Infectivity Switch in Bacteriophage T7.

Authors:  Chutikarn Chitboonthavisuk; Chun Huai Luo; Phil Huss; Mikayla Fernholz; Srivatsan Raman
Journal:  ACS Synth Biol       Date:  2022-01-05       Impact factor: 5.249

3.  Moisture modulates soil reservoirs of active DNA and RNA viruses.

Authors:  Ruonan Wu; Michelle R Davison; Yuqian Gao; Carrie D Nicora; Jason E Mcdermott; Kristin E Burnum-Johnson; Kirsten S Hofmockel; Janet K Jansson
Journal:  Commun Biol       Date:  2021-08-26

4.  A Novel and Ubiquitous Marine Methylophage Provides Insights into Viral-Host Coevolution and Possible Host-Range Expansion in Streamlined Marine Heterotrophic Bacteria.

Authors:  Holger H Buchholz; Luis M Bolaños; Ashley G Bell; Michelle L Michelsen; Michael J Allen; Ben Temperton
Journal:  Appl Environ Microbiol       Date:  2022-03-21       Impact factor: 4.792

Review 5.  Know Your Enemy: Successful Bioinformatic Approaches to Predict Functional RNA Structures in Viral RNAs.

Authors:  Chun Shen Lim; Chris M Brown
Journal:  Front Microbiol       Date:  2018-01-04       Impact factor: 5.640

6.  Significant differences in terms of codon usage bias between bacteriophage early and late genes: a comparative genomics analysis.

Authors:  Oriah Mioduser; Eli Goz; Tamir Tuller
Journal:  BMC Genomics       Date:  2017-11-13       Impact factor: 3.969

7.  Phage S144, A New Polyvalent Phage Infecting Salmonella spp. and Cronobacter sakazakii.

Authors:  Michela Gambino; Anders Nørgaard Sørensen; Stephen Ahern; Georgios Smyrlis; Yilmaz Emre Gencay; Hanne Hendrix; Horst Neve; Jean-Paul Noben; Rob Lavigne; Lone Brøndsted
Journal:  Int J Mol Sci       Date:  2020-07-22       Impact factor: 5.923

8.  A Toxicity Screening Approach to Identify Bacteriophage-Encoded Anti-Microbial Proteins.

Authors:  Ushanandini Mohanraj; Xing Wan; Cindy M Spruit; Mikael Skurnik; Maria I Pajunen
Journal:  Viruses       Date:  2019-11-14       Impact factor: 5.048

9.  Phage-Host Interaction Analysis by Flow Cytometry Allows for Rapid and Efficient Screening of Phages.

Authors:  Luís D R Melo; Rodrigo Monteiro; Diana P Pires; Joana Azeredo
Journal:  Antibiotics (Basel)       Date:  2022-01-27

10.  Integrative omics analysis of Pseudomonas aeruginosa virus PA5oct highlights the molecular complexity of jumbo phages.

Authors:  Cédric Lood; Katarzyna Danis-Wlodarczyk; Bob G Blasdel; Ho Bin Jang; Dieter Vandenheuvel; Yves Briers; Jean-Paul Noben; Vera van Noort; Zuzanna Drulis-Kawa; Rob Lavigne
Journal:  Environ Microbiol       Date:  2020-03-25       Impact factor: 5.491

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