Literature DB >> 25482117

Nucleolus-tethering system (NoTS).

Yin Liu1, Yuda Fang.   

Abstract

Multiple biological processes are regulated by complicated interaction networks formed by protein-protein or protein-RNA interactions. Nuclear bodies (NBs) are a class of membrane-less subnuclear structures, acting as reaction sites, storage and modification sites, or transcription regulating sites involved in signaling transduction. Biochemical and fluorescence-based methods are widely used to study protein-protein interactions, but false-positive results are a major issue, especially for some fluorescence-based methods. Moreover, these methods fail to be applied to study the formation of NBs, which were characterized by a popular bacterial Lac operator and/or repressor (LacO/LacI) system in mammalian cells. Methods investigating assembly of plant NBs are not available. We have recently developed a nucleolar marker protein nucleolin2 (Nuc2)-based method named Nucleolus-tethering System (NoTS) and showed its application in interaction assay among nucleoplasmic proteins and initiation of plant specific NBs, photobodies. In this extraview, we will compare NoTS with the traditional methods and discuss the assembly mechanisms of NBs, in addition to advantages, limitations, and perspectives about the application of NoTS.

Entities:  

Keywords:  BiFC; Cajal body; F2H; FRET; photobody; yeast two-hybrid

Mesh:

Year:  2014        PMID: 25482117      PMCID: PMC4152342          DOI: 10.4161/nucl.29837

Source DB:  PubMed          Journal:  Nucleus        ISSN: 1949-1034            Impact factor:   4.197


  51 in total

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Authors:  Anireddy S N Reddy; Irene S Day; Janett Göhring; Andrea Barta
Journal:  Plant Physiol       Date:  2011-11-01       Impact factor: 8.340

Review 2.  The photomorphogenic repressors COP1 and DET1: 20 years later.

Authors:  On Sun Lau; Xing Wang Deng
Journal:  Trends Plant Sci       Date:  2012-06-15       Impact factor: 18.313

Review 3.  The Cajal body and histone locus body.

Authors:  Zehra Nizami; Svetlana Deryusheva; Joseph G Gall
Journal:  Cold Spring Harb Perspect Biol       Date:  2010-05-26       Impact factor: 10.005

4.  Protein interaction screening by quantitative immunoprecipitation combined with knockdown (QUICK).

Authors:  Matthias Selbach; Matthias Mann
Journal:  Nat Methods       Date:  2006-10-29       Impact factor: 28.547

5.  The CTCF insulator protein is posttranslationally modified by SUMO.

Authors:  Melissa J MacPherson; Linda G Beatty; Wenjing Zhou; Minjie Du; Paul D Sadowski
Journal:  Mol Cell Biol       Date:  2008-11-24       Impact factor: 4.272

6.  A fluorescent two-hybrid assay for direct visualization of protein interactions in living cells.

Authors:  Kourosh Zolghadr; Oliver Mortusewicz; Ulrich Rothbauer; Regina Kleinhans; Heike Goehler; Erich E Wanker; M Cristina Cardoso; Heinrich Leonhardt
Journal:  Mol Cell Proteomics       Date:  2008-07-12       Impact factor: 5.911

7.  De novo formation of a subnuclear body.

Authors:  Trish E Kaiser; Robert V Intine; Miroslav Dundr
Journal:  Science       Date:  2008-10-23       Impact factor: 47.728

8.  The interaction between DCL1 and HYL1 is important for efficient and precise processing of pri-miRNA in plant microRNA biogenesis.

Authors:  Yukio Kurihara; Yuasa Takashi; Yuichiro Watanabe
Journal:  RNA       Date:  2006-02       Impact factor: 4.942

9.  Arabidopsis PHYTOCHROME INTERACTING FACTOR proteins promote phytochrome B polyubiquitination by COP1 E3 ligase in the nucleus.

Authors:  In-Cheol Jang; Rossana Henriques; Hak Soo Seo; Akira Nagatani; Nam-Hai Chua
Journal:  Plant Cell       Date:  2010-07-06       Impact factor: 11.277

10.  MENepsilon/beta noncoding RNAs are essential for structural integrity of nuclear paraspeckles.

Authors:  Yasnory T F Sasaki; Takashi Ideue; Miho Sano; Toutai Mituyama; Tetsuro Hirose
Journal:  Proc Natl Acad Sci U S A       Date:  2009-02-02       Impact factor: 11.205

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  1 in total

1.  Novel Fluorescence Arginine Analogue as a Sensor for Direct Identification and Imaging of Nitric Oxide Synthase-like Enzymes in Plants.

Authors:  Kang Chang; Tongtong Guo; Pengfei Li; Yin Liu; Yufang Xu; Yuda Fang; Xuhong Qian
Journal:  Sci Rep       Date:  2016-09-02       Impact factor: 4.379

  1 in total

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