Literature DB >> 25479944

Metatranscriptome of marine bacterioplankton during winter time in the North Sea assessed by total RNA sequencing.

Anna Kopf1, Ivaylo Kostadinov2, Antje Wichels3, Christian Quast4, Frank Oliver Glöckner5.   

Abstract

Marine metatranscriptome data was generated as part of a study investigating the bacterioplankton communities towards the end of a diatom-dominated spring phytoplankton bloom. This genomic resource article reports a metatranscriptomic dataset from amidst the winter time prior to the occurrence of the spring diatom bloom. Up to 58% of all sequences could be assigned to predicted genes. Taxonomic analysis based on expressed 16S ribosomal RNA genes identified Alphaproteobacteria and Gammaproteobacteria as the most active community members.
Copyright © 2014. Published by Elsevier B.V.

Entities:  

Keywords:  Bacterioplankton; CAZymes; Membrane transporter; Metatranscriptomics; Proteorhodopsin; TonB

Mesh:

Substances:

Year:  2014        PMID: 25479944     DOI: 10.1016/j.margen.2014.11.001

Source DB:  PubMed          Journal:  Mar Genomics        ISSN: 1874-7787            Impact factor:   1.710


  5 in total

Review 1.  Standing on the Shoulders of Giant Viruses: Five Lessons Learned about Large Viruses Infecting Small Eukaryotes and the Opportunities They Create.

Authors:  Steven W Wilhelm; Samantha R Coy; Eric R Gann; Mohammad Moniruzzaman; Joshua M A Stough
Journal:  PLoS Pathog       Date:  2016-08-25       Impact factor: 6.823

2.  Metatranscriptomic and metagenomic description of the bacterial nitrogen metabolism in waste water wet oxidation effluents.

Authors:  Julien Crovadore; Vice Soljan; Gautier Calmin; Romain Chablais; Bastien Cochard; François Lefort
Journal:  Heliyon       Date:  2017-10-18

3.  The green impact: bacterioplankton response toward a phytoplankton spring bloom in the southern North Sea assessed by comparative metagenomic and metatranscriptomic approaches.

Authors:  Bernd Wemheuer; Franziska Wemheuer; Jacqueline Hollensteiner; Frauke-Dorothee Meyer; Sonja Voget; Rolf Daniel
Journal:  Front Microbiol       Date:  2015-08-11       Impact factor: 5.640

4.  Metatranscriptomic evidence of pervasive and diverse chemolithoautotrophy relevant to C, S, N and Fe cycling in a shallow alluvial aquifer.

Authors:  Talia N M Jewell; Ulas Karaoz; Eoin L Brodie; Kenneth H Williams; Harry R Beller
Journal:  ISME J       Date:  2016-03-04       Impact factor: 10.302

5.  Proteorhodopsins dominate the expression of phototrophic mechanisms in seasonal and dynamic marine picoplankton communities.

Authors:  Ella T Sieradzki; Jed A Fuhrman; Sara Rivero-Calle; Laura Gómez-Consarnau
Journal:  PeerJ       Date:  2018-10-23       Impact factor: 2.984

  5 in total

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