Literature DB >> 25478036

DISCUSSION OF: TREELETS-AN ADAPTIVE MULTI-SCALE BASIS FOR SPARSE UNORDERED DATA.

Catherine Tuglus1, Mark J van der Laan1.   

Abstract

We would like to congratulate Lee, Nadler and Wasserman on their contribution to clustering and data reduction methods for high p and low n situations. A composite of clustering and traditional principal components analysis, treelets is an innovative method for multi-resolution analysis of unordered data. It is an improvement over traditional PCA and an important contribution to clustering methodology. Their paper presents theory and supporting applications addressing the two main goals of the treelet method: (1) Uncover the underlying structure of the data and (2) Data reduction prior to statistical learning methods. We will organize our discussion into two main parts to address their methodology in terms of each of these two goals. We will present and discuss treelets in terms of a clustering algorithm and an improvement over traditional PCA. We will also discuss the applicability of treelets to more general data, in particular, the application of treelets to microarray data.

Year:  2008        PMID: 25478036      PMCID: PMC4251495          DOI: 10.1214/07-AOAS137

Source DB:  PubMed          Journal:  Ann Appl Stat        ISSN: 1932-6157            Impact factor:   2.083


  1 in total

1.  Gene expression analysis with the parametric bootstrap.

Authors:  M J van der Laan; J Bryan
Journal:  Biostatistics       Date:  2001-12       Impact factor: 5.899

  1 in total
  6 in total

1.  Analysis of Shared Haplotypes amongst Palauans Maps Loci for Psychotic Disorders to 4q28 and 5q23-q31.

Authors:  Corneliu A Bodea; Frank A Middleton; Nadine M Melhem; Lambertus Klei; Youeun Song; Josepha Tiobech; Pearl Marumoto; Victor Yano; Stephen V Faraone; Kathryn Roeder; Marina Myles-Worsley; Bernie Devlin; William Byerley
Journal:  Mol Neuropsychiatry       Date:  2016-10-12

2.  REFINING GENETICALLY INFERRED RELATIONSHIPS USING TREELET COVARIANCE SMOOTHING.

Authors:  Andrew Crossett; Ann B Lee; Lambertus Klei; Bernie Devlin; Kathryn Roeder
Journal:  Ann Appl Stat       Date:  2013-06-27       Impact factor: 2.083

3.  The Incremental Multiresolution Matrix Factorization Algorithm.

Authors:  Vamsi K Ithapu; Risi Kondor; Sterling C Johnson; Vikas Singh
Journal:  Proc IEEE Comput Soc Conf Comput Vis Pattern Recognit       Date:  2017-07

4.  Treelet transform analysis to identify clusters of systemic inflammatory variance in a population with moderate-to-severe traumatic brain injury.

Authors:  Sushupta M Vijapur; Leah E Vaughan; Nabil Awan; Dominic DiSanto; Gina P McKernan; Amy K Wagner
Journal:  Brain Behav Immun       Date:  2021-01-30       Impact factor: 19.227

5.  Patterns of adipose tissue fatty acids and the risk of atrial fibrillation: A case-cohort study.

Authors:  Pia Thisted Dinesen; Thomas Andersen Rix; Albert Marni Joensen; Christina Cathrine Dahm; Søren Lundbye-Christensen; Erik Berg Schmidt; Kim Overvad
Journal:  PLoS One       Date:  2018-12-11       Impact factor: 3.240

6.  Control of neural systems at multiple scales using model-free, deep reinforcement learning.

Authors:  B A Mitchell; L R Petzold
Journal:  Sci Rep       Date:  2018-07-16       Impact factor: 4.379

  6 in total

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