Literature DB >> 25476990

Simulations of living cell origins using a cellular automata model.

Takeshi Ishida1.   

Abstract

Understanding the generalized mechanisms of cell self-assembly is fundamental for applications in various fields, such as mass producing molecular machines in nanotechnology. Thus, the details of real cellular reaction networks and the necessary conditions for self-organized cells must be elucidated. We constructed a 2-dimensional cellular automata model to investigate the emergence of biological cell formation, which incorporated a looped membrane and a membrane-bound information system (akin to a genetic code and gene expression system). In particular, with an artificial reaction system coupled with a thermal system, the simultaneous formation of a looped membrane and an inner reaction process resulted in a more stable structure. These double structures inspired the primitive biological cell formation process from chemical evolution stage. With a model to simulate cellular self-organization in a 2-dimensional cellular automata model, 3 phenomena could be realized: (1) an inner reaction system developed as an information carrier precursor (akin to DNA); (2) a cell border emerged (akin to a cell membrane); and (3) these cell structures could divide into 2. This double-structured cell was considered to be a primary biological cell. The outer loop evolved toward a lipid bilayer membrane, and inner polymeric particles evolved toward precursor information carriers (evolved toward DNA). This model did not completely clarify all the necessary and sufficient conditions for biological cell self-organization. Further, our virtual cells remained unstable and fragile. However, the "garbage bag model" of Dyson proposed that the first living cells were deficient; thus, it would be reasonable that the earliest cells were more unstable and fragile than the simplest current unicellular organisms.

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Year:  2014        PMID: 25476990     DOI: 10.1007/s11084-014-9372-7

Source DB:  PubMed          Journal:  Orig Life Evol Biosph        ISSN: 0169-6149            Impact factor:   1.950


  14 in total

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Journal:  Phys Rev Lett       Date:  1996-04-29       Impact factor: 9.161

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Authors:  H J Melosh
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Review 3.  Marine hydrothermal systems and the origin of life: future research.

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Journal:  Orig Life Evol Biosph       Date:  1992       Impact factor: 1.950

Review 4.  Toward the engineering of minimal living cells.

Authors:  Pier Luigi Luisi
Journal:  Anat Rec       Date:  2002-11-01

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Authors:  Addy Pross
Journal:  J Theor Biol       Date:  2003-02-07       Impact factor: 2.691

6.  Causation and the origin of life. Metabolism or replication first?

Authors:  Addy Pross
Journal:  Orig Life Evol Biosph       Date:  2004-06       Impact factor: 1.950

7.  Evolution. Transitions from nonliving to living matter.

Authors:  Steen Rasmussen; Liaohai Chen; David Deamer; David C Krakauer; Norman H Packard; Peter F Stadler; Mark A Bedau
Journal:  Science       Date:  2004-02-13       Impact factor: 47.728

8.  Use of the Boltzmann equation to simulate lattice gas automata.

Authors: 
Journal:  Phys Rev Lett       Date:  1988-11-14       Impact factor: 9.161

9.  A whole-cell computational model predicts phenotype from genotype.

Authors:  Jonathan R Karr; Jayodita C Sanghvi; Derek N Macklin; Miriam V Gutschow; Jared M Jacobs; Benjamin Bolival; Nacyra Assad-Garcia; John I Glass; Markus W Covert
Journal:  Cell       Date:  2012-07-20       Impact factor: 41.582

10.  Template switching between PNA and RNA oligonucleotides.

Authors:  C Böhler; P E Nielsen; L E Orgel
Journal:  Nature       Date:  1995-08-17       Impact factor: 49.962

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