Literature DB >> 25472526

Next-generation sequencing-based molecular diagnosis of 82 retinitis pigmentosa probands from Northern Ireland.

Li Zhao1, Feng Wang, Hui Wang, Yumei Li, Sharon Alexander, Keqing Wang, Colin E Willoughby, Jacques E Zaneveld, Lichun Jiang, Zachry T Soens, Philip Earle, David Simpson, Giuliana Silvestri, Rui Chen.   

Abstract

Retinitis pigmentosa (RP) is a group of inherited retinal disorders characterized by progressive photoreceptor degeneration. An accurate molecular diagnosis is essential for disease characterization and clinical prognoses. A retinal capture panel that enriches 186 known retinal disease genes, including 55 known RP genes, was developed. Targeted next-generation sequencing was performed for a cohort of 82 unrelated RP cases from Northern Ireland, including 46 simplex cases and 36 familial cases. Disease-causing mutations were identified in 49 probands, including 28 simplex cases and 21 familial cases, achieving a solving rate of 60 %. In total, 65 pathogenic mutations were found, and 29 of these were novel. Interestingly, the molecular information of 12 probands was neither consistent with their initial inheritance pattern nor clinical diagnosis. Further clinical reassessment resulted in a refinement of the clinical diagnosis in 11 patients. This is the first study to apply next-generation sequencing-based, comprehensive molecular diagnoses to a large number of RP probands from Northern Ireland. Our study shows that molecular information can aid clinical diagnosis, potentially changing treatment options, current family counseling and management.

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Year:  2014        PMID: 25472526      PMCID: PMC4347882          DOI: 10.1007/s00439-014-1512-7

Source DB:  PubMed          Journal:  Hum Genet        ISSN: 0340-6717            Impact factor:   4.132


  81 in total

1.  Evaluation of the myosin VIIA gene and visual function in patients with Usher syndrome type I.

Authors:  A K Bharadwaj; J P Kasztejna; S Huq; E L Berson; T P Dryja
Journal:  Exp Eye Res       Date:  2000-08       Impact factor: 3.467

2.  Mutations in ABCR (ABCA4) in patients with Stargardt macular degeneration or cone-rod degeneration.

Authors:  C E Briggs; D Rucinski; P J Rosenfeld; T Hirose; E L Berson; T P Dryja
Journal:  Invest Ophthalmol Vis Sci       Date:  2001-09       Impact factor: 4.799

3.  Next generation sequencing-based molecular diagnosis of retinitis pigmentosa: identification of a novel genotype-phenotype correlation and clinical refinements.

Authors:  Feng Wang; Hui Wang; Han-Fang Tuan; Duy H Nguyen; Vincent Sun; Vafa Keser; Sara J Bowne; Lori S Sullivan; Hongrong Luo; Ling Zhao; Xia Wang; Jacques E Zaneveld; Jason S Salvo; Sorath Siddiqui; Louise Mao; Dianna K Wheaton; David G Birch; Kari E Branham; John R Heckenlively; Cindy Wen; Ken Flagg; Henry Ferreyra; Jacqueline Pei; Ayesha Khan; Huanan Ren; Keqing Wang; Irma Lopez; Raheel Qamar; Juan C Zenteno; Raul Ayala-Ramirez; Beatriz Buentello-Volante; Qing Fu; David A Simpson; Yumei Li; Ruifang Sui; Giuliana Silvestri; Stephen P Daiger; Robert K Koenekoop; Kang Zhang; Rui Chen
Journal:  Hum Genet       Date:  2013-10-24       Impact factor: 4.132

Review 4.  Gene mutations in retinitis pigmentosa and their clinical implications.

Authors:  D Y Wang; W M Chan; P O S Tam; L Baum; D S C Lam; K K L Chong; B J Fan; C P Pang
Journal:  Clin Chim Acta       Date:  2005-01       Impact factor: 3.786

5.  Mutation of a gene encoding a protein with extracellular matrix motifs in Usher syndrome type IIa.

Authors:  J D Eudy; M D Weston; S Yao; D M Hoover; H L Rehm; M Ma-Edmonds; D Yan; I Ahmad; J J Cheng; C Ayuso; C Cremers; S Davenport; C Moller; C B Talmadge; K W Beisel; M Tamayo; C C Morton; A Swaroop; W J Kimberling; J Sumegi
Journal:  Science       Date:  1998-06-12       Impact factor: 47.728

6.  Comprehensive screening of the USH2A gene in Usher syndrome type II and non-syndromic recessive retinitis pigmentosa.

Authors:  Babak Jian Seyedahmadi; Carlo Rivolta; Julia A Keene; Eliot L Berson; Thaddeus P Dryja
Journal:  Exp Eye Res       Date:  2004-08       Impact factor: 3.467

7.  USH2A mutation analysis in 70 Dutch families with Usher syndrome type II.

Authors:  Ronald J E Pennings; Heleen Te Brinke; Michael D Weston; Annemarie Claassen; Dana J Orten; Henriëtte Weekamp; Annelies Van Aarem; Patrick L M Huygen; August F Deutman; Lies H Hoefsloot; Frans P M Cremers; Cor W R J Cremers; William J Kimberling; Hannie Kremer
Journal:  Hum Mutat       Date:  2004-08       Impact factor: 4.878

8.  dbNSFP v2.0: a database of human non-synonymous SNVs and their functional predictions and annotations.

Authors:  Xiaoming Liu; Xueqiu Jian; Eric Boerwinkle
Journal:  Hum Mutat       Date:  2013-07-10       Impact factor: 4.878

9.  Diagnostic challenges in retinitis pigmentosa: genotypic multiplicity and phenotypic variability.

Authors:  Susie Chang; Leah Vaccarella; Sunday Olatunji; Colleen Cebulla; John Christoforidis
Journal:  Curr Genomics       Date:  2011-06       Impact factor: 2.236

10.  Analysis of 6,515 exomes reveals the recent origin of most human protein-coding variants.

Authors:  Wenqing Fu; Timothy D O'Connor; Goo Jun; Hyun Min Kang; Goncalo Abecasis; Suzanne M Leal; Stacey Gabriel; Mark J Rieder; David Altshuler; Jay Shendure; Deborah A Nickerson; Michael J Bamshad; Joshua M Akey
Journal:  Nature       Date:  2012-11-28       Impact factor: 49.962

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  47 in total

1.  Leveraging splice-affecting variant predictors and a minigene validation system to identify Mendelian disease-causing variants among exon-captured variants of uncertain significance.

Authors:  Zachry T Soens; Justin Branch; Shijing Wu; Zhisheng Yuan; Yumei Li; Hui Li; Keqing Wang; Mingchu Xu; Lavan Rajan; Fabiana L Motta; Renata T Simões; Irma Lopez-Solache; Radwan Ajlan; David G Birch; Peiquan Zhao; Fernanda B Porto; Juliana Sallum; Robert K Koenekoop; Ruifang Sui; Rui Chen
Journal:  Hum Mutat       Date:  2017-08-18       Impact factor: 4.878

2.  Deletion of the transmembrane protein Prom1b in zebrafish disrupts outer-segment morphogenesis and causes photoreceptor degeneration.

Authors:  Zhaojing Lu; Xuebin Hu; James Reilly; Danna Jia; Fei Liu; Shanshan Yu; Xiliang Liu; Shanglun Xie; Zhen Qu; Yayun Qin; Yuwen Huang; Yuexia Lv; Jingzhen Li; Pan Gao; Fulton Wong; Xinhua Shu; Zhaohui Tang; Mugen Liu
Journal:  J Biol Chem       Date:  2019-07-30       Impact factor: 5.157

Review 3.  Role of carotenoids and retinoids during heart development.

Authors:  Ioan Ovidiu Sirbu; Aimée Rodica Chiş; Alexander Radu Moise
Journal:  Biochim Biophys Acta Mol Cell Biol Lipids       Date:  2020-01-22       Impact factor: 4.698

4.  Olfactory Dysfunction in Patients With CNGB1-Associated Retinitis Pigmentosa.

Authors:  Peter Charbel Issa; Peggy Reuter; Laura Kühlewein; Johannes Birtel; Martin Gliem; Anke Tropitzsch; Katherine L Whitcroft; Hanno J Bolz; Kenji Ishihara; Robert E MacLaren; Susan M Downes; Akio Oishi; Eberhart Zrenner; Susanne Kohl; Thomas Hummel
Journal:  JAMA Ophthalmol       Date:  2018-07-01       Impact factor: 7.389

5.  Whole-Exome Sequencing Identifies Biallelic IDH3A Variants as a Cause of Retinitis Pigmentosa Accompanied by Pseudocoloboma.

Authors:  Laurence H M Pierrache; Adva Kimchi; Rinki Ratnapriya; Lisa Roberts; Galuh D N Astuti; Alexey Obolensky; Avigail Beryozkin; Martha J H Tjon-Fo-Sang; Jose Schuil; Caroline C W Klaver; Ernie M H F Bongers; Lonneke Haer-Wigman; Nicoline Schalij; Martijn H Breuning; Gratia M Fischer; Eyal Banin; Raj S Ramesar; Anand Swaroop; L Ingeborgh van den Born; Dror Sharon; Frans P M Cremers
Journal:  Ophthalmology       Date:  2017-04-13       Impact factor: 12.079

6.  PRPH2 mutation update: In silico assessment of 245 reported and 7 novel variants in patients with retinal disease.

Authors:  Manon H C A Peeters; Mubeen Khan; Anoek A M B Rooijakkers; Timo Mulders; Lonneke Haer-Wigman; Camiel J F Boon; Caroline C W Klaver; L Ingeborgh van den Born; Carel B Hoyng; Frans P M Cremers; Anneke I den Hollander; Claire-Marie Dhaenens; Rob W J Collin
Journal:  Hum Mutat       Date:  2021-09-20       Impact factor: 4.700

7.  A mutation in ADIPOR1 causes nonsyndromic autosomal dominant retinitis pigmentosa.

Authors:  Jinlu Zhang; Changguan Wang; Yan Shen; Ningning Chen; Likun Wang; Ling Liang; Tong Guo; Xiaobei Yin; Zhizhong Ma; Bo Zhang; Liping Yang
Journal:  Hum Genet       Date:  2016-09-21       Impact factor: 4.132

8.  A novel mutation of the RPGR gene in a Chinese X-linked retinitis pigmentosa family and possible involvement of X-chromosome inactivation.

Authors:  Yun Wang; Lan Lu; Daren Zhang; Yueqiu Tan; Danli Li; Fen He; Xiaodong Jiao; Ming Yang; J Fielding Hejtmancik; Xuyang Liu
Journal:  Eye (Lond)       Date:  2020-08-24       Impact factor: 4.456

9.  Genotype-Phenotype Correlations in RP1-Associated Retinal Dystrophies: A Multi-Center Cohort Study in JAPAN.

Authors:  Kei Mizobuchi; Takaaki Hayashi; Noriko Oishi; Daiki Kubota; Shuhei Kameya; Koichiro Higasa; Takuma Futami; Hiroyuki Kondo; Katsuhiro Hosono; Kentaro Kurata; Yoshihiro Hotta; Kazutoshi Yoshitake; Takeshi Iwata; Tomokazu Matsuura; Tadashi Nakano
Journal:  J Clin Med       Date:  2021-05-24       Impact factor: 4.241

10.  Clinical Evidence for the Importance of the Wild-Type PRPF31 Allele in the Phenotypic Expression of RP11.

Authors:  Danial Roshandel; Jennifer A Thompson; Rachael C Heath Jeffery; Dan Zhang; Tina M Lamey; Terri L McLaren; John N De Roach; Samuel McLenachan; David A Mackey; Fred K Chen
Journal:  Genes (Basel)       Date:  2021-06-14       Impact factor: 4.096

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