Literature DB >> 25470237

Setting up a wide panel of patient-derived tumor xenografts of non-small cell lung cancer by improving the preanalytical steps.

Marius Ilie1, Manoel Nunes, Lydia Blot, Véronique Hofman, Elodie Long-Mira, Catherine Butori, Eric Selva, Ana Merino-Trigo, Nicolas Vénissac, Jérôme Mouroux, Patricia Vrignaud, Paul Hofman.   

Abstract

With the ongoing need to improve therapy for non-small cell lung cancer (NSCLC) there has been increasing interest in developing reliable preclinical models to test novel therapeutics. Patient-derived tumor xenografts (PDX) are considered to be interesting candidates. However, the establishment of such model systems requires highly specialized research facilities and introduces logistic challenges. We aimed to establish an extensive well-characterized panel of NSCLC xenograft models in the context of a long-distance research network after careful control of the preanalytical steps. One hundred fresh surgically resected NSCLC specimens were shipped in survival medium at room temperature from a hospital-integrated biobank to animal facilities. Within 24 h post-surgery, tumor fragments were subcutaneously xenografted into immunodeficient mice. PDX characterization was performed by histopathological, immunohistochemical, aCGH and next-generation sequencing approaches. For this model system, the tumor take rate was 35%, with higher rates for squamous carcinoma (60%) than for adenocarcinoma (13%). Patients for whom PDX tumors were obtained had a significantly shorter disease-free survival (DFS) compared to patients for whom no PDX tumors (P = 0.039) were obtained. We established a large panel of PDX NSCLC models with a high frequency of mutations (29%) in EGFR, KRAS, NRAS, MEK1, BRAF, PTEN, and PI3KCA genes and with gene amplification (20%) of c-MET and FGFR1. This new patient-derived NSCLC xenograft collection, established regardless of the considerable time required and the distance between the clinic and the animal facilities, recapitulated the histopathology and molecular diversity of NSCLC and provides stable and reliable preclinical models for human lung cancer research.
© 2014 The Authors. Cancer Medicine published by John Wiley & Sons Ltd.

Entities:  

Keywords:  Molecular pathology; NSCLC; PDX; preanalytical

Mesh:

Year:  2014        PMID: 25470237      PMCID: PMC4329004          DOI: 10.1002/cam4.357

Source DB:  PubMed          Journal:  Cancer Med        ISSN: 2045-7634            Impact factor:   4.452


Introduction

Despite some recent improvements in therapies targeting specific genomic alterations, lung cancer remains the first leading cause of cancer deaths worldwide 1. Continued effort in classification of lung cancer based on gene expression profiling and genomic sequencing have revealed underlying complexity and molecular heterogeneity within the disease, which continues to be a challenge for therapeutic intervention 2,3. To successfully identify and translate new treatment regimens to the clinic, it is critical that robust preclinical models that faithfully model human cancers recapitulate this complexity. Patient-derived tumor xenografts (PDX), established by implanting fresh patient tumor fragments into immunodeficient mice, subcutaneously or orthotopically, are reported to be more relevant to the clinical context than cell-based tumor xenografts 4–7. This model system involves serial propagation in mice of tissue explants and avoids cell culture on Petri dishes. The use of standardized procedures for the assessment of the therapeutic efficacy of different drugs using PDXs allows rapid assessment of combined therapies on a relatively large set of tumors 8. To date, only a few studies developed PDX models for NSCLC 4,7–10. Recent evidence suggests that PDX models can maintain certain pathological and molecular features of the patient's tumor 11. A limited number of studies have extensively characterized these PDX models at the histological, molecular, and pharmacological levels to ensure that they truly represent the diversity of the clinical situation 4,6. Some studies provided evidence of a potential correlation of responses of anti-EGFR therapies within PDX models harboring EGFR activating mutations 4,6. However, the number of primary NSCLC tumors included and the rate of engrafted tumors were limited. To our knowledge, surgical fragments must be processed rapidly and there is often a limited amount of the original tumor material, which hinders extensive standardized translation into clinical facilities worldwide. Here, through a consortium effort of hospitals, academic groups, and pharmaceutical company, we have developed a large collection of NSCLC models directly derived from tumor samples collected during patient surgery within a context of a long-distance research network. Fresh patient tumor fragments were maintained in survival medium and then shipped at room temperature to a distant site with animal facilities located at around 1000 km/620 miles away. Starting from 100 surgically resected NSCLC specimens, we have established 35 transplantable PDXs. We have characterized these xenograft models at the histological and immunohistochemical level as well as the molecular level by using next-generation sequencing (NGS) and array (comparative genomic hybridization, CGH) analysis to ensure that they represent the diversity of the clinical situation. All the characteristics of the models and clinical patient history are being loaded into an internal database for efficient use in terms of target validation, biomarker discovery, and preclinical evaluation of new agents. In conclusion, the establishment of this collection holds great promise not only to further develop personalized approaches for the treatment of NSCLC patients but also for wide implementation in clinical trials of these xenograft models located at a distance from the collecting area.

Materials and Methods

Patient recruitment

One hundred tumor specimens were obtained at initial surgery from primary diagnosed NSCLC patients from the Hospital related Biobank of the Pasteur Hospital (BB-0033-00025, Nice, France). Only six patients received a neoadjuvant chemotherapy. Written informed consent was obtained from each patient and the study was approved by the hospital ethics committee. To protect the manipulators, only patients seronegative for HIV1&2 and HBV and HCV were included in this study. Tumor histology was assessed by four pathologists (M. I., V. H., E. L., and C. B.). Immediately after surgery (on average 1 h after resection), two or more fragments were fixed in 10% neutral buffered formalin (Diapath, Martinengo, Italy) and paraffin-embedded (Thermo Fisher Scientific, Villebon-sur-Yvette, France) for histological analysis, five fragments were snap frozen in liquid nitrogen, then stored at −80°C for molecular characterization, and several small fragments (from 0.5 to 1 cm3), depending on the tumor size and area of necrosis, were transferred in culture medium for engraftment, which was carried out within 24 h after resection. The time of warm ischemia was recorded by the surgeon for each specimen and the time of cold ischemia was recorded using radio-frequency identification (RFID) technology 12. A similar process of sample conservation was applied to tumor fragments collected from mice.

Animals

All experimental procedures were approved by the Sanofi, Animal Care and Use committee. CD1 nude and CB17-SCID female mice were obtained from Charles River France. The mice (at least 7-week old at the start of engraftment) had free access to food and water.

Tumor engraftment and PDX maintenance

Fresh patient tumor specimens were maintained in AQIX® medium (AQIX Ltd., The London Bioscience Innovation Centre, London, UK) at room temperature for shipment from the Nice (France) Hospital Biobank to the Sanofi animal facilities in Vitry-sur-Seine (France) within 24 h post-surgery. The estimated distance between the facilities is about 1000 km/620 miles. The nonnecrotic tumor tissue was cut into 5 × 5 mm fragments (without dissociation to maintain the tissue integrity) and subcutaneously (SC) engrafted into five female SCID mice using a 12-gauge trocar. The mice were housed in isolators for 7 weeks to control if their sanitary status was specific and opportunist pathogen-free (SOPF). The exponentially growing tumors were passaged SC to other mice and maintained for a maximum of 10 passages in mice. The tumor growth in CD-1 nude and SCID mice was evaluated to select the best strain for tumor maintenance and cryopreservation. Using Recovery™ Cell Culture Freezing Medium (Gibco®, Grand Canyon, NY), the cryopreservation was performed at passages 1–5 (up to 8 for some slow-growing PDX), to generate a tumor bank of frozen tissue, which allowed the study of patient-derived NSCLC xenografts (PDX) at only low passages. Tumor growth post thawing was checked at a passage close to the one used for PDX characterization. Depending on the tumor growth the passage of characterization was usually between passage 3 or 5, but in some cases it was extended up to passage 8. The tumor take rate was calculated taking into account the established tumor models, that is, tumor models successfully passaged at least twice and validated as a human tumor (no contamination by a murine or human lymphoma).

PDX tumor growth characterization

Tumor volumes were estimated by two-dimensional measurement using the formula: tumor volume (mm3) = [length (mm) − width2 (mm2)]/2. The tumor doubling time (Td) in days was estimated from the log linear tumor growth during the exponential phase (range, 100–1000 mm3).

Histopathological, immunohistochemical, and FISH characterization

Examination of the PDX morphology was conducted on slides obtained from serial 5-μm-thick sections cut from each formol-fixed paraffin-embedded PDX blocks at early and late passages and processed for hematoxylin–eosin–safran (HES) staining. A mouse monoclonal anti-TTF1 antibody (clone 8G7G3/1; Ventana Medical Systems, Roche Group, Tucson, AZ), mouse monoclonal anti-p63 antibody (clone 4A4; Ventana Medical Systems) and rabbit monoclonal anti-c-MET antibody (Ventana) were used for immunohistochemistry. Control sections were processed in parallel with rabbit or mouse nonimmune IgG (Dako, Carpinteria, CA) used at the same concentrations as the primary antibodies. A dual color FISH analysis was performed using a c-MET specific FISH probe (Vysis MET SpectrumRed FISH Probe Kit; 7q31.2) and chromosome 7 centromeric probe CEP (Vysis CEP7 SpectrumGreen probe; Abbott Molecular Inc., Des Plaines, IL) as previously described 13. For the FGFR1 FISH assay, 4-μm tumor tissue sections were hybridized overnight with the ZytoLight SPEC FGFR1/CEN 8 Dual Color Probe (ZytoVision, Bremerhaven, Germany), as previously described 14. Target gene and CEP signals were observed using a fluorescence microscope (Eclipse 80i; Nikon, Champigny-sur-Marne, France) equipped with the appropriate filters. Enumeration of the c-MET or FGFR1 genes and chromosome 7 or 8 were conducted by microscopic examination of at least 60 tumor nuclei, which yielded a ratio of c-MET/CEP7 or FGFR1/CEP8. Tumors with a ratio ≥2 or presence of ≥10% gene cluster were defined as amplification 6,14.

DNA sequencing of patient samples and PDX models

NGS and mutation calling of PDX models were performed at the Beijing Genomics Institute (BGI, Beijing, China). Library preparation was performed using exome capture Agilent SureSelect All Exon 50M. Libraries were sequenced using the Illumina HiSeq platform. The normal human genomic DNA used in these experiments was purchased from the Coriell Institute for Medical Research (Camden, NJ). DNA samples from each PDX were sequenced and compared with their constitutive DNA from patients as a control.

Array CGH analysis on PDX models

Evaluation of the genome-wide, gene copy number was performed using the 400k CGH Agilent technology array. Oligonucleotide aCGH processing was performed as detailed in the manufacturer's protocol (version 6.2 October 2009; http://www.agilent.com). The microarray required 600 ng of genomic DNA from the reference sample and from the experimental sample. The array was scanned with an Agilent DNA Microarray Scanner (G2565CA). Data were extracted from scanned images and normalized using Feature Extraction software (v10.7.3.1; Agilent). In all experiments, sex-matched DNA from a human well-characterized normal female (NA12878) or one well-characterized normal male (NA10858) was used as reference DNA. The normal human genomic DNA used in these experiments was purchased from the Coriell Institute for Medical Research (Camden, NJ). The log2 ratio and segmentation were generated using Array Studiosoftware. Array Studio, Array Viewer, Array Server, and all other Omicsoft products or service names are registered trademarks or trademarks of Omicsoft Corporation (Research Triangle Park, NC). All genomic coordinates were established on the UCSC human genome build hg19 15. Gene amplification or high-gain is defined by a copy number (CN) ≥ 5 or log2 ratio ≥ 1.32) and gene gain or low gain by (2.5 ≤ copy number (CN) < 5 or 0.32 ≤ log2 ratio < 1.32).

Statistical analysis

To identify clinical parameters that contribute to the success of establishment of PDX, a logistic regression analysis was used to assess the association of the success rate of establishment with clinic-pathological parameters and DFS evaluation. A patient tissue that was successfully turned into a xenograft model was defined as 1 and 0 otherwise. P-values from univariate models were computed from the log likelihood ratio test. Factors that showed significant results from a univariate analysis were considered in a multivariate analysis to adjust for imbalance of covariates, including sex, age, histology, and pTNM stage. DFS was calculated for patients with documented follow-up of at least 12 months and was defined as time between surgery and relapse or death. DFS percentages were calculated using the Kaplan–Meier method and the survival curves were compared with a log-rank test. Variables of interest were tested in the presence of other clinical factors using a Cox proportional hazards model. Analyses were performed using SPSS 16.0 statistical software (SPSS Inc., Chicago, IL). All statistical tests were two-sided, and P < 0.05 indicated statistical significance.

Results

Establishment of patient-derived NSCLC xenograft mouse models

One hundred consecutive NSCLC specimens from primary tumors were harvested from patients and subcutaneously engrafted into immunodeficient mice within 24 h post-surgery. The main clinical parameters of the patients are summarized in Table1. Of the 100 engraftments, 35 led to the establishment of PDX models, representing a tumor take rate of 35% (Table1). The tumor take rate was jeopardized by human lymphomagenesis contaminating 13 models. Two PDX models were also discarded due to emergence of murine lymphoma.
Table 1

Clinical and pathological characteristics of 100 patients and their tumors according to the engraftibility

Patient characteristics (n = 100)No PDX (n = 65)PDX (n = 35)P-value (univariate)P-value (multivariate)
Age (years)0.5000.834
 Median (range)64 (41–87)69 (55–83)
Sex0.0080.117
 Male39 (60%)30 (86%)
 Female26 (40%)5 (14%)
Neoadjuvant chemotherapy12 (3%)4 (11%)0.0930.216
Smoking status0.0860.256
 Former or current smokers37 (57%)26 (74%)
 Never smoked28 (43%)9 (26%)
Histological cell type<0.0010.013
 Invasive adenocarcinoma46 (71%)7 (20%)
 Squamous cell carcinoma14 (22%)24 (69%)
 Large cell carcinoma2 (3%)2 (6%)
 Sarcomatoid carcinoma3 (4%)1 (3%)
 Combined SCLC-SCC0 (0%)1 (3%)
Median tumor size (range) cm3.2 (1.2–10)4.5 (2–9.5)0.5000.879
Median tumor cell content (range) %50 (15–90)50 (10–80)0.3710.758
pTNM stage0.0500.342
 I31 (48%)8 (23%)
 II19 (29%)16 (46%)
 III/IV15 (23%)11 (31%)
Differentiation grade0.0240.362
 Well28 (43%)7 (20%)
 Moderate16 (25%)17 (49%)
 Poor21 (32%)11 (31%)
Mutation status0.1390.538
EGFR mutation2 (3%)1 (3%)
KRAS mutation11 (17%)2 (6%)
 15 drivers genomic alterations17 (26%)15 (43%)

TNM, tumor node metastasis; PDX, patient-derived tumor xenografts; SCC, squamous cell carcinomas; SCLC, small cell lung cancer.

Neodjuvant chemotherapy: cisplatin–docetaxel regimen.

Clinical and pathological characteristics of 100 patients and their tumors according to the engraftibility TNM, tumor node metastasis; PDX, patient-derived tumor xenografts; SCC, squamous cell carcinomas; SCLC, small cell lung cancer. Neodjuvant chemotherapy: cisplatindocetaxel regimen. A prolonged time of warm ischemia significantly caused failure of engraftment (P = 0.033; Fig. S1). In contrast, little impact of the time of warm and cold ischemia together was noted (P = 0.358; Fig. S1). A logistic regression analysis was used to identify clinical variables associated with a high or low probability of in vivo tumor take (Table1). A multivariate analysis showed that the tumor histological cell type was the only parameter that had a significant impact on the success rate of establishment of PDX. Squamous cell carcinomas (SCC) was much more prone to be tumorigenic in immunocompromised mice (28/47; 60%) compared to adenocarcinomas (ADC; 7/52; 13%). Other factors, including sex, smoking status, neoadjuvant chemotherapy, pathologic grade, and mutation, did not correlate with the success rate; although a univariate analysis showed that sex, smoking status, pTNM stage, and differentiation grade may have an impact when these parameters are considered alone. A biobank was established for all models and the success rate after thawing reached 89%.

Characteristics and stability of PDX models

To evaluate whether stable xenografts retained histological features and if the expression pattern of a number of selected biomarkers was consistent with the tumor of origin, we conducted comparative histopathological and immunohistochemical analyses of outgrowth using clinically relevant biomarkers (e.g., TTF1, p63), and compared the biomarker status with the tumor of origin (Figs.1 and 2).
Figure 1

PDX models of lung adenocarcinoma (ADC) specimens recapitulate primary tumor histopathological and phenotype. Hematoxylin–eosin–safran (HES), immunohistochemical (TTF1, c-MET), and c-MET FISH analysis of the original patient tumor and xenograft passages for one ADC selected model (LUN-NIC-0084). Scale bar, 10 μm. PDX, patient-derived tumor xenografts.

Figure 2

Preservation of the tumor histology and phenotype of a squamous cell carcinoma (SCC) PDX. Hematoxylin–eosin–safran (HES), immunohistochemical (p63), and FGFR1FISH analysis of the original patient tumor and xenograft passages for one SCC selected model (LUN-NIC-0007). Scale bar, 10 μm. PDX, patient-derived tumor xenografts.

PDX models of lung adenocarcinoma (ADC) specimens recapitulate primary tumor histopathological and phenotype. Hematoxylin–eosin–safran (HES), immunohistochemical (TTF1, c-MET), and c-MET FISH analysis of the original patient tumor and xenograft passages for one ADC selected model (LUN-NIC-0084). Scale bar, 10 μm. PDX, patient-derived tumor xenografts. Preservation of the tumor histology and phenotype of a squamous cell carcinoma (SCC) PDX. Hematoxylin–eosin–safran (HES), immunohistochemical (p63), and FGFR1FISH analysis of the original patient tumor and xenograft passages for one SCC selected model (LUN-NIC-0007). Scale bar, 10 μm. PDX, patient-derived tumor xenografts. The PDX NSCLC tissues stained for HES and diagnostic markers (e.g., TTF1 or p63) exhibited a similar morphology and immunophenotype to that of the patient tissues from which the primary model was derived (Figs.1 and 2). The relative state of differentiation is also retained on passaging (two different passages between P6 and P12). PDX were enriched in tumor cells compared with patient samples and the human stroma was finally replaced with a murine stroma during successive passages of the tumors in mice. A fair degree of stroma was retained throughout passaging but did appear to decrease somewhat in comparison to that observed in the primary tumors. Overall, these observations confirm that this PDX collection recapitulates the main histological and immunophenotype profile of corresponding NSCLC.

Correlation of engraftibility and clinical outcome of NSCLC patients

To determine the impact of engraftment on the clinical outcome of the patients we assessed the DFS of the NSCLC patients included in our study. The median follow-up time was 24 months (range: 3–42.7 months). Thirty-five patients developed clinical recurrence and 17 patients died of lung cancer metastases. Patients for whom tumor engraftment was successful had a significantly shorter DFS than those for whom no PDX was obtained (Fig.3A). Among the patients for whom a PDX was obtained, those with an adenocarcinoma had a worse DFS than those with a SCC (Fig.3B). Conversely, patients with an adenocarcinoma and no PDX had a better DFS than those with a SCC. In the multivariate analysis, in which patient age, sex, histology, and pTNM stage were taken into account, the success of engraftment remained an independent predictor of shorter DFS (Table2).
Figure 3

Correlation between engraftibility and the patients' clinical outcome. (A) Kaplan–Meier survival curves for PDX and no PDX patients. (B) DFS according to engraftibility in relationship to tumor histology. DFS, disease-free survival; PDX, patient-derived tumor xenografts.

Table 2

Disease-free survival according to the patient and tumor characteristics

Prognostic factorHR95% CIP-value
Age0.7510.312–1.8080.524
Sex (M vs. F)1.1420.510–2.5580.746
Histology (ADC vs. other)0.6070.241–1.5300.290
pTNM stage (I + II vs. III + IV)0.4620.235–0.9100.026
Engraftment (yes vs. no)1.0401.002–1.0790.039

M, male; F, female; ADC, adenocarcinoma; TNM, tumor node metastasis.

Disease-free survival according to the patient and tumor characteristics M, male; F, female; ADC, adenocarcinoma; TNM, tumor node metastasis. Correlation between engraftibility and the patients' clinical outcome. (A) Kaplan–Meier survival curves for PDX and no PDX patients. (B) DFS according to engraftibility in relationship to tumor histology. DFS, disease-free survival; PDX, patient-derived tumor xenografts.

Molecular characterization of patient-derived NSCLC xenograft models

To investigate the molecular abnormalities displayed by the PDX models we performed genomic profiling by NGS and aCGH analysis. We examined a panel of genes that are of particular interest in current targeted therapies and targeted drug development for NSCLC 16,17. NGS analysis detected mutations in 10 of 35 (29%) PDX models (Fig.4). These included resistant KRAS mutations (p.Gly12Cys and p.Gly12Val) in two of seven (29%) adenocarcinoma PDX. A frequency that is consistent with previous reports on the incidence of mutations in this gene in lung adenocarcinoma 18. Additionally, we detected one infrequent EGFR mutation in a sarcomatoid PDX and one BRAF mutation in an adenocarcinoma model. PI3KCA mutations were detected in one SCC and one adenocarcinoma model. FGFR1 gene amplification was detected in 5 of 24 (21%) SCC models and c-MET gene amplification in one (14%) adenocarcinoma model. One sarcomatoid tumor sample harbored four mutations in the EGFR, MEK1, NRAS, and PTEN genes, respectively. The overall frequency of gene mutations and amplifications in this collection was similar to the frequency reported in the literature for NSCLC (Fig.4). A similar genomic profile was found in the corresponding primary tumors (Fig.4).
Figure 4

Molecular profile comparison of primary tumors and the 35 PDX NSCLC models using next-generation sequencing and array CGH analyses. *The mutation status in patients' tumor is shown for a panel of genes that are currently of interest in routine practice for NSCLC. Analysis of FGFR1 and c-MET copy number variation of patient samples was performed by FISH assay. aCGH data were generated for PDX samples. PDX, patient-derived tumor xenografts; aCGH, array comparative genomic hybridization.

Molecular profile comparison of primary tumors and the 35 PDX NSCLC models using next-generation sequencing and array CGH analyses. *The mutation status in patients' tumor is shown for a panel of genes that are currently of interest in routine practice for NSCLC. Analysis of FGFR1 and c-MET copy number variation of patient samples was performed by FISH assay. aCGH data were generated for PDX samples. PDX, patient-derived tumor xenografts; aCGH, array comparative genomic hybridization.

Discussion

As individualized targeted therapeutic approaches have become more common in NSCLC drug development, models that reflect the patient heterogeneity and faithfully recapitulate the in vivo tumor biology are crucial to improve prediction of clinical efficacy of novel therapies and to reduce the attrition rate in oncology 11. As the recent approval of the EGFR and ALK inhibitors for the treatment of NSCLC, research has focused on the use of preclinical models and tissue biopsies from patients to examine the mechanisms of responsiveness and resistance to these molecules or to emerging targeted agents 11,19. The establishment of PDX models from NSCLC specimens has been recently investigated as a potential source of therapeutically relevant information and as a supply of biological material 20–24. Most studies report on patient-derived NSCLC xenograft models established from fresh NSCLC samples obtained from patients undergoing surgical resection and immediately implanted into mice, which show a tumor take rate ranging from 25% to 40% 4,7. One group used the technique of directly implanting frozen NSCLC samples from patients into mice and showed a success rate of 32% 6. However, an essential feature of the establishment of PDX models should include the standardization of the collection and shipping at room temperature to a central animal facility. In a context of a long-distance research network, we have generated 35 patient-derived NSCLC xenograft mouse models by directly grafting fresh patient tumor fragments into SCID mice. The fresh tumor fragments were shipped at room temperature in survival medium and grafted after no more than 24 h post-surgery. For this single-centered collection we did not note any impact on the take rate based on the duration of the cold ischemia. Control of the time of ischemia was carried out using RFID technology Accurate selection of the tumor zones of interest by senior pathologists and the use of the AQIX survival medium contributed to the high rate of engraftment observed in this study. Using this methodology, we achieved an engraftment success rate of 35%, which is within a similar range to that achieved for other systems 6,7. Lymphomagenesis of human origin was observed in 13 models, the primary xenografts being performed in SCID mice, which reduced the final tumor take rate. In switching the strain of mice from SCID to nude mice, this type of contamination no longer occurred 25. In our goal to develop a platform approach, our PDX models were also successfully engrafted on nude mice, known to exhibit metabolic and drug pharmacokinetic/pharmacodynamic profiles closer to humans than SCID mice and are preferable for drug discovery due to their superior tolerability of agents 26. Therefore, these PDX could be used in the mouse for studies into drug efficacy and pharmacokinetics/pharmacodynamics. As it can be very expensive and unpractical to continuously passage PDXs in mice we set up a collection of frozen PDX samples. The characteristics of the PDXs models were representative of the histological heterogeneity of NSCLC, covering all the major histological subtypes 27. Here, as in other studies 6,7, the primary tumor histology was the major clinical feature to have an impact on the engraftment rate. SCC had a higher success rates in comparison to all other histological subtypes of PDXs. While other patients' characteristics such as age, sex, smoking status, tumor size, tumor cell content, pTNM stage, or differentiation grade, had no impact on the engraftment rates in a multivariate analysis, still the univariate analysis showed that the male sex, higher pTNM stage, and a moderate to poor differentiation grade affected the take rate of PDXs. An interesting and potentially clinically relevant application of these PDX models in NSCLC would be the ability to predict, based on the success of PDX engraftment, those patients who are more likely to relapse after curative surgery, with the added benefit of having an available “Mouse Avatar” for therapeutic testing prior to actual relapse in the patient 11,28. We and others show that patients for whom tumors were able to form xenografts had a significantly shorter DFS, in a multivariate analysis, than patients whose tumors failed to engraft 7. This argues in support of the use of these models in early-stage disease to develop more-effective (and patient-directed) adjuvant chemotherapy 11,23. The success of targeted therapies in stratifying treatment has underscored the importance of performing mechanistic and functional investigations on NSCLC. Current approaches of personalized medicine have been incorporating NGS technologies for wide genomic profiling of patient tumors to identify novel therapeutic targets. In this study, we report extensive molecular characterization of the 35 NSCLC PDX models using NGS technology and aCGH analysis. The analysis of a panel of genes of particular interest in current targeted therapy and targeted drug development for NSCLC showed that the genomic profile is consistent between the original patient tumor and the corresponding PDX tissue in all the models. When early and relatively late passages of xenografts were compared, no major differences could be observed in terms of alteration in the copy number or the gene mutation profile. This clearly points to the stability of NSCLC xenograft models, as depicted for breast, colon, and pancreatic tumor xenografts 29–31. With respect to the issue of molecular diversity of NSCLC, our novel xenograft models represent useful tools for preclinical evaluation of targeted drug candidates. In conclusion, we established a large panel of 35 PDX NSCLC models in a context of a long-distance research network. We showed that PDXs maintain a high degree of similarity with the original clinical tumor sample with regard to histology, immunohistochemistry, and the genomic profile. This PDX panel is currently being used in a prospective way to target expression, biomarker discovery, and preclinical evaluation of personalized therapies by the members of the consortium. Our model system, regardless of the time and distance between the location of sampling and engraftment, provides a stable and reliable animal model for human lung cancer research.
  29 in total

1.  The UCSC Genome Browser Database.

Authors:  D Karolchik; R Baertsch; M Diekhans; T S Furey; A Hinrichs; Y T Lu; K M Roskin; M Schwartz; C W Sugnet; D J Thomas; R J Weber; D Haussler; W J Kent
Journal:  Nucleic Acids Res       Date:  2003-01-01       Impact factor: 16.971

2.  Patient-derived first generation xenografts of non-small cell lung cancers: promising tools for predicting drug responses for personalized chemotherapy.

Authors:  Xin Dong; Jun Guan; John C English; Julia Flint; John Yee; Kenneth Evans; Nevin Murray; Calum Macaulay; Raymond T Ng; Peter W Gout; Wan L Lam; Janessa Laskin; Victor Ling; Stephen Lam; Yuzhuo Wang
Journal:  Clin Cancer Res       Date:  2010-02-23       Impact factor: 12.531

3.  Comparative profiling of the novel epothilone, sagopilone, in xenografts derived from primary non-small cell lung cancer.

Authors:  Stefanie Hammer; Anette Sommer; Iduna Fichtner; Michael Becker; Jana Rolff; Johannes Merk; Ulrich Klar; Jens Hoffmann
Journal:  Clin Cancer Res       Date:  2010-02-23       Impact factor: 12.531

Review 4.  KRAS mutations in non-small cell lung cancer.

Authors:  Gregory J Riely; Jenifer Marks; William Pao
Journal:  Proc Am Thorac Soc       Date:  2009-04-15

5.  Utility and applications of orthotopic models of human non-small cell lung cancer (NSCLC) for the evaluation of novel and emerging cancer therapeutics.

Authors:  Verline Justilien; Alan P Fields
Journal:  Curr Protoc Pharmacol       Date:  2013-10-08

6.  Patient-derived xenografts of non-small-cell lung cancer: a pre-clinical model to evaluate adjuvant chemotherapy?

Authors:  Johannes Merk; Jana Rolff; Michael Becker; Gunda Leschber; Iduna Fichtner
Journal:  Eur J Cardiothorac Surg       Date:  2009-06-06       Impact factor: 4.191

7.  MET gene amplification or EGFR mutation activate MET in lung cancers untreated with EGFR tyrosine kinase inhibitors.

Authors:  Takafumi Kubo; Hiromasa Yamamoto; William W Lockwood; Ilse Valencia; Junichi Soh; Michael Peyton; Masaru Jida; Hiroki Otani; Tetsuya Fujii; Mamoru Ouchida; Nagio Takigawa; Katsuyuki Kiura; Kenji Shimizu; Hiroshi Date; John D Minna; Marileila Varella-Garcia; Wan L Lam; Adi F Gazdar; Shinichi Toyooka
Journal:  Int J Cancer       Date:  2009-04-15       Impact factor: 7.396

8.  Effects of Src inhibitors on cell growth and epidermal growth factor receptor and MET signaling in gefitinib-resistant non-small cell lung cancer cells with acquired MET amplification.

Authors:  Takeshi Yoshida; Isamu Okamoto; Wataru Okamoto; Erina Hatashita; Yuki Yamada; Kiyoko Kuwata; Kazuto Nishio; Masahiro Fukuoka; Pasi A Jänne; Kazuhiko Nakagawa
Journal:  Cancer Sci       Date:  2009-09-14       Impact factor: 6.716

9.  Highly tumorigenic lung cancer CD133+ cells display stem-like features and are spared by cisplatin treatment.

Authors:  Giulia Bertolini; Luca Roz; Paola Perego; Monica Tortoreto; Enrico Fontanella; Laura Gatti; Graziella Pratesi; Alessandra Fabbri; Francesca Andriani; Stella Tinelli; Elena Roz; Roberto Caserini; Salvatore Lo Vullo; Tiziana Camerini; Luigi Mariani; Domenico Delia; Elisa Calabrò; Ugo Pastorino; Gabriella Sozzi
Journal:  Proc Natl Acad Sci U S A       Date:  2009-09-10       Impact factor: 11.205

10.  Preclinical assessment of cisplatin-based therapy versus docetaxel-based therapy on a panel of human non-small-cell lung cancer xenografts.

Authors:  Fariba Némati; Rui Bras-Gonçalves; Jean-Jacques Fontaine; Gonzague de Pinieux; Patricia De Cremoux; Alain Chapelier; Catherine Daniel; Pierre Laurent-Puig; Alain Livartowski; Jean-Gabriel Judde; Vincent Bordier; Marie-France Poupon; Didier Decaudin
Journal:  Anticancer Drugs       Date:  2009-11       Impact factor: 2.248

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  33 in total

Review 1.  Preclinical mouse cancer models: a maze of opportunities and challenges.

Authors:  Chi-Ping Day; Glenn Merlino; Terry Van Dyke
Journal:  Cell       Date:  2015-09-24       Impact factor: 41.582

Review 2.  Lung Cancers: Molecular Characterization, Clonal Heterogeneity and Evolution, and Cancer Stem Cells.

Authors:  Ugo Testa; Germana Castelli; Elvira Pelosi
Journal:  Cancers (Basel)       Date:  2018-07-27       Impact factor: 6.639

Review 3.  Model Systems for the Study of Malignant Melanoma.

Authors:  Randal K Gregg
Journal:  Methods Mol Biol       Date:  2021

4.  Tumor characteristics associated with engraftment of patient-derived non-small cell lung cancer xenografts in immunocompromised mice.

Authors:  Yungchang Chen; Ran Zhang; Li Wang; Arlene M Correa; Apar Pataer; Yi Xu; Xiaoshan Zhang; Chenghui Ren; Shuhong Wu; Qing H Meng; Junya Fujimoto; Vanessa B Jensen; Mara B Antonoff; Wayne L Hofstetter; Reza J Mehran; George Pisimisis; David C Rice; Boris Sepesi; Ara A Vaporciyan; Garrett L Walsh; Stephen G Swisher; Jack A Roth; John V Heymach; Bingliang Fang
Journal:  Cancer       Date:  2019-07-09       Impact factor: 6.860

5.  Modeling of Patient-Derived Xenografts in Colorectal Cancer.

Authors:  Anastasia Katsiampoura; Kanwal Raghav; Zhi-Qin Jiang; David G Menter; Andreas Varkaris; Maria P Morelli; Shanequa Manuel; Ji Wu; Alexey V Sorokin; Bahar Salimian Rizi; Christopher Bristow; Feng Tian; Susan Airhart; Mingshan Cheng; Bradley M Broom; Jeffrey Morris; Michael J Overman; Garth Powis; Scott Kopetz
Journal:  Mol Cancer Ther       Date:  2017-05-03       Impact factor: 6.261

6.  Antitumor activity of kinetochore-associated protein 2 siRNA against lung cancer patient-derived tumor xenografts.

Authors:  Yukimasa Makita; Mika Teratani; Shumpei Murata; Yasutaka Hoashi; Satoru Matsumoto; Yuji Kawamata
Journal:  Oncol Lett       Date:  2018-01-29       Impact factor: 2.967

Review 7.  Circulating tumor cells and CDX models as a tool for preclinical drug development.

Authors:  Alice Lallo; Maximilian W Schenk; Kristopher K Frese; Fiona Blackhall; Caroline Dive
Journal:  Transl Lung Cancer Res       Date:  2017-08

Review 8.  Cancer Prevention: Obstacles, Challenges and the Road Ahead.

Authors:  Frank L Meyskens; Hasan Mukhtar; Cheryl L Rock; Jack Cuzick; Thomas W Kensler; Chung S Yang; Scott D Ramsey; Scott M Lippman; David S Alberts
Journal:  J Natl Cancer Inst       Date:  2015-11-07       Impact factor: 13.506

9.  Increased Tumor Growth Rate and Mesenchymal Properties of NSCLC-Patient-Derived Xenograft Models during Serial Transplantation.

Authors:  José Miguel Pardo-Sánchez; Nuria Mancheño; José Cerón; Carlos Jordá; Emilio Ansotegui; Óscar Juan; Sarai Palanca; Antonio Cremades; Carolina Gandía; Rosa Farràs
Journal:  Cancers (Basel)       Date:  2021-06-14       Impact factor: 6.639

10.  Generation of Non-Small Cell Lung Cancer Patient-Derived Xenografts to Study Intratumor Heterogeneity.

Authors:  Zoi Kanaki; Alexandra Voutsina; Athina Markou; Ioannis S Pateras; Konstantinos Potaris; Margaritis Avgeris; Periklis Makrythanasis; Emmanouil I Athanasiadis; Ioannis Vamvakaris; Eleni Patsea; Konstantinos Vachlas; Evi Lianidou; Vassilis Georgoulias; Athanasios Kotsakis; Apostolos Klinakis
Journal:  Cancers (Basel)       Date:  2021-05-18       Impact factor: 6.639

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