Literature DB >> 25468968

Robust spectrotemporal decomposition by iteratively reweighted least squares.

Demba Ba1, Behtash Babadi2, Patrick L Purdon3, Emery N Brown4.   

Abstract

Classical nonparametric spectral analysis uses sliding windows to capture the dynamic nature of most real-world time series. This universally accepted approach fails to exploit the temporal continuity in the data and is not well-suited for signals with highly structured time-frequency representations. For a time series whose time-varying mean is the superposition of a small number of oscillatory components, we formulate nonparametric batch spectral analysis as a Bayesian estimation problem. We introduce prior distributions on the time-frequency plane that yield maximum a posteriori (MAP) spectral estimates that are continuous in time yet sparse in frequency. Our spectral decomposition procedure, termed spectrotemporal pursuit, can be efficiently computed using an iteratively reweighted least-squares algorithm and scales well with typical data lengths. We show that spectrotemporal pursuit works by applying to the time series a set of data-derived filters. Using a link between Gaussian mixture models, l1 minimization, and the expectation-maximization algorithm, we prove that spectrotemporal pursuit converges to the global MAP estimate. We illustrate our technique on simulated and real human EEG data as well as on human neural spiking activity recorded during loss of consciousness induced by the anesthetic propofol. For the EEG data, our technique yields significantly denoised spectral estimates that have significantly higher time and frequency resolution than multitaper spectral estimates. For the neural spiking data, we obtain a new spectral representation of neuronal firing rates. Spectrotemporal pursuit offers a robust spectral decomposition framework that is a principled alternative to existing methods for decomposing time series into a small number of smooth oscillatory components.

Entities:  

Keywords:  dynamics; neural signal processing; recursive estimation; spectral decomposition; structured sparsity

Mesh:

Year:  2014        PMID: 25468968      PMCID: PMC4273341          DOI: 10.1073/pnas.1320637111

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  7 in total

1.  Estimating a state-space model from point process observations.

Authors:  Anne C Smith; Emery N Brown
Journal:  Neural Comput       Date:  2003-05       Impact factor: 2.026

2.  A point process framework for relating neural spiking activity to spiking history, neural ensemble, and extrinsic covariate effects.

Authors:  Wilson Truccolo; Uri T Eden; Matthew R Fellows; John P Donoghue; Emery N Brown
Journal:  J Neurophysiol       Date:  2004-09-08       Impact factor: 2.714

3.  Prefrontal phase locking to hippocampal theta oscillations.

Authors:  Athanassios G Siapas; Evgueniy V Lubenov; Matthew A Wilson
Journal:  Neuron       Date:  2005-04-07       Impact factor: 17.173

4.  Recovering time-varying networks of dependencies in social and biological studies.

Authors:  Amr Ahmed; Eric P Xing
Journal:  Proc Natl Acad Sci U S A       Date:  2009-07-01       Impact factor: 11.205

5.  Rapid fragmentation of neuronal networks at the onset of propofol-induced unconsciousness.

Authors:  Laura D Lewis; Veronica S Weiner; Eran A Mukamel; Jacob A Donoghue; Emad N Eskandar; Joseph R Madsen; William S Anderson; Leigh R Hochberg; Sydney S Cash; Emery N Brown; Patrick L Purdon
Journal:  Proc Natl Acad Sci U S A       Date:  2012-11-05       Impact factor: 11.205

6.  Electroencephalogram signatures of loss and recovery of consciousness from propofol.

Authors:  Patrick L Purdon; Eric T Pierce; Eran A Mukamel; Michael J Prerau; John L Walsh; Kin Foon K Wong; Andres F Salazar-Gomez; Priscilla G Harrell; Aaron L Sampson; Aylin Cimenser; ShiNung Ching; Nancy J Kopell; Casie Tavares-Stoeckel; Kathleen Habeeb; Rebecca Merhar; Emery N Brown
Journal:  Proc Natl Acad Sci U S A       Date:  2013-03-04       Impact factor: 11.205

7.  Convergence and Stability of a Class of Iteratively Re-weighted Least Squares Algorithms for Sparse Signal Recovery in the Presence of Noise.

Authors:  Behtash Babadi; Demba Ba; Patrick L Purdon; Emery N Brown
Journal:  IEEE Trans Signal Process       Date:  2014-01-01       Impact factor: 4.931

  7 in total
  7 in total

1.  A State Space and Density Estimation Framework for Sleep Staging in Obstructive Sleep Apnea.

Authors:  Dae Y Kang; Pamela N DeYoung; Atul Malhotra; Robert L Owens; Todd P Coleman
Journal:  IEEE Trans Biomed Eng       Date:  2017-05-08       Impact factor: 4.538

2.  Real-time particle filtering and smoothing algorithms for detecting abrupt changes in neural ensemble spike activity.

Authors:  Sile Hu; Qiaosheng Zhang; Jing Wang; Zhe Chen
Journal:  J Neurophysiol       Date:  2017-12-20       Impact factor: 2.714

3.  Robust Estimation of Sparse Narrowband Spectra from Neuronal Spiking Data.

Authors:  Sina Miran; Patrick L Purdon; Emery N Brown; Behtash Babadi
Journal:  IEEE Trans Biomed Eng       Date:  2016-12-22       Impact factor: 4.538

4.  State-space multitaper time-frequency analysis.

Authors:  Seong-Eun Kim; Michael K Behr; Demba Ba; Emery N Brown
Journal:  Proc Natl Acad Sci U S A       Date:  2017-12-18       Impact factor: 11.205

5.  Bayesian inverse methods for spatiotemporal characterization of gastric electrical activity from cutaneous multi-electrode recordings.

Authors:  Alexis B Allegra; Armen A Gharibans; Gabriel E Schamberg; David C Kunkel; Todd P Coleman
Journal:  PLoS One       Date:  2019-10-14       Impact factor: 3.240

6.  Bayesian-Inference Embedded Spline-Kerneled Chirplet Transform for Spectrum-Aware Motion Magnification.

Authors:  Enjian Cai; Dongsheng Li; Jianyuan Lin; Hongnan Li
Journal:  Sensors (Basel)       Date:  2022-04-06       Impact factor: 3.576

7.  Scalable Microfabrication Procedures for Adhesive-Integrated Flexible and Stretchable Electronic Sensors.

Authors:  Dae Y Kang; Yun-Soung Kim; Gladys Ornelas; Mridu Sinha; Keerthiga Naidu; Todd P Coleman
Journal:  Sensors (Basel)       Date:  2015-09-16       Impact factor: 3.576

  7 in total

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