Literature DB >> 25468329

The value of mechanistic biophysical information for systems-level understanding of complex biological processes such as cytokinesis.

Thomas D Pollard1.   

Abstract

This review illustrates the value of quantitative information including concentrations, kinetic constants and equilibrium constants in modeling and simulating complex biological processes. Although much has been learned about some biological systems without these parameter values, they greatly strengthen mechanistic accounts of dynamical systems. The analysis of muscle contraction is a classic example of the value of combining an inventory of the molecules, atomic structures of the molecules, kinetic constants for the reactions, reconstitutions with purified proteins and theoretical modeling to account for the contraction of whole muscles. A similar strategy is now being used to understand the mechanism of cytokinesis using fission yeast as a favorable model system.
Copyright © 2014 Biophysical Society. Published by Elsevier Inc. All rights reserved.

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Year:  2014        PMID: 25468329      PMCID: PMC4255220          DOI: 10.1016/j.bpj.2014.10.031

Source DB:  PubMed          Journal:  Biophys J        ISSN: 0006-3495            Impact factor:   4.033


  66 in total

1.  Molecular model of the contractile ring.

Authors:  D Biron; E Alvarez-Lacalle; T Tlusty; E Moses
Journal:  Phys Rev Lett       Date:  2005-08-25       Impact factor: 9.161

2.  mDia2 induces the actin scaffold for the contractile ring and stabilizes its position during cytokinesis in NIH 3T3 cells.

Authors:  Sadanori Watanabe; Yoshikazu Ando; Shingo Yasuda; Hiroshi Hosoya; Naoki Watanabe; Toshimasa Ishizaki; Shuh Narumiya
Journal:  Mol Biol Cell       Date:  2008-02-20       Impact factor: 4.138

3.  Polar gradients of the DYRK-family kinase Pom1 couple cell length with the cell cycle.

Authors:  Sophie G Martin; Martine Berthelot-Grosjean
Journal:  Nature       Date:  2009-05-27       Impact factor: 49.962

Review 4.  Positioning cytokinesis.

Authors:  Snezhana Oliferenko; Ting Gang Chew; Mohan K Balasubramanian
Journal:  Genes Dev       Date:  2009-03-15       Impact factor: 11.361

5.  On the mechanics of the first cleavage division of the sea urchin egg.

Authors:  X He; M Dembo
Journal:  Exp Cell Res       Date:  1997-06-15       Impact factor: 3.905

6.  Full-genome RNAi profiling of early embryogenesis in Caenorhabditis elegans.

Authors:  B Sönnichsen; L B Koski; A Walsh; P Marschall; B Neumann; M Brehm; A-M Alleaume; J Artelt; P Bettencourt; E Cassin; M Hewitson; C Holz; M Khan; S Lazik; C Martin; B Nitzsche; M Ruer; J Stamford; M Winzi; R Heinkel; M Röder; J Finell; H Häntsch; S J M Jones; M Jones; F Piano; K C Gunsalus; K Oegema; P Gönczy; A Coulson; A A Hyman; C J Echeverri
Journal:  Nature       Date:  2005-03-24       Impact factor: 49.962

7.  Actin depolymerization drives actomyosin ring contraction during budding yeast cytokinesis.

Authors:  Inês Mendes Pinto; Boris Rubinstein; Andrei Kucharavy; Jay R Unruh; Rong Li
Journal:  Dev Cell       Date:  2012-06-12       Impact factor: 12.270

8.  Requirements for contractility in disordered cytoskeletal bundles.

Authors:  Martin Lenz; Margaret L Gardel; Aaron R Dinner
Journal:  New J Phys       Date:  2012-03-28       Impact factor: 3.729

9.  Three-dimensional structure of myosin subfragment-1: a molecular motor.

Authors:  I Rayment; W R Rypniewski; K Schmidt-Bäse; R Smith; D R Tomchick; M M Benning; D A Winkelmann; G Wesenberg; H M Holden
Journal:  Science       Date:  1993-07-02       Impact factor: 47.728

10.  Localization of the (1,3)beta-D-glucan synthase catalytic subunit homologue Bgs1p/Cps1p from fission yeast suggests that it is involved in septation, polarized growth, mating, spore wall formation and spore germination.

Authors:  Juan Carlos G Cortés; Junpei Ishiguro; Angel Durán; Juan Carlos Ribas
Journal:  J Cell Sci       Date:  2002-11-01       Impact factor: 5.285

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  9 in total

1.  Fission yeast myosin Myo2 is down-regulated in actin affinity by light chain phosphorylation.

Authors:  Luther W Pollard; Carol S Bookwalter; Qing Tang; Elena B Krementsova; Kathleen M Trybus; Susan Lowey
Journal:  Proc Natl Acad Sci U S A       Date:  2017-08-14       Impact factor: 11.205

Review 2.  Coordinating septum formation and the actomyosin ring during cytokinesis in Schizosaccharomyces pombe.

Authors:  Brian S Hercyk; Udo N Onwubiko; Maitreyi E Das
Journal:  Mol Microbiol       Date:  2019-09-30       Impact factor: 3.501

3.  Protein friction and filament bending facilitate contraction of disordered actomyosin networks.

Authors:  Alexander K Y Tam; Alex Mogilner; Dietmar B Oelz
Journal:  Biophys J       Date:  2021-08-12       Impact factor: 3.699

4.  Cdc42 reactivation at growth sites is regulated by local cell-cycle-dependent loss of its GTPase-activating protein Rga4 in fission yeast.

Authors:  Julie Rich-Robinson; Afton Russell; Eleanor Mancini; Maitreyi Das
Journal:  J Cell Sci       Date:  2021-10-11       Impact factor: 5.235

5.  A Cdc42 GEF, Gef1, through endocytosis organizes F-BAR Cdc15 along the actomyosin ring and promotes concentric furrowing.

Authors:  Udo N Onwubiko; Paul J Mlynarczyk; Bin Wei; Julius Habiyaremye; Amanda Clack; Steven M Abel; Maitreyi E Das
Journal:  J Cell Sci       Date:  2019-02-28       Impact factor: 5.285

6.  Mechanoregulated inhibition of formin facilitates contractile actomyosin ring assembly.

Authors:  Dennis Zimmermann; Kaitlin E Homa; Glen M Hocky; Luther W Pollard; Enrique M De La Cruz; Gregory A Voth; Kathleen M Trybus; David R Kovar
Journal:  Nat Commun       Date:  2017-09-26       Impact factor: 14.919

7.  Coarse-grained simulations of actomyosin rings point to a nodeless model involving both unipolar and bipolar myosins.

Authors:  Lam T Nguyen; Matthew T Swulius; Samya Aich; Mithilesh Mishra; Grant J Jensen
Journal:  Mol Biol Cell       Date:  2018-04-10       Impact factor: 4.138

Review 8.  Rho Family GTPases in Fission Yeast Cytokinesis.

Authors:  Brian Hercyk; Maitreyi Das
Journal:  Commun Integr Biol       Date:  2019-10-21

9.  Counting fluorescently labeled proteins in tissues in the spinning-disk microscope using single-molecule calibrations.

Authors:  Maijia Liao; Yin-Wei Kuo; Jonathon Howard
Journal:  Mol Biol Cell       Date:  2022-03-24       Impact factor: 3.612

  9 in total

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