Literature DB >> 25468001

Genetic diversity analysis among collected purslane (Portulaca oleracea L.) accessions using ISSR markers.

M Amirul Alam1, Abdul Shukor Juraimi2, Mohd Yusop Rafii3, Azizah Abdul Hamid4, Ibrahim Wasiu Arolu5, M Abdul Latif6.   

Abstract

Genetic diversity and relationships among 45 collected purslane accessions were evaluated using ISSR markers. The 28 primers gave a total of 167 bands, among which 163 were polymorphic (97.6%). The genetic diversity as estimated by Shannon's information index was 0.513, revealing a quite high level of genetic diversity in the germplasm. The average number of observed allele, effective allele, expected heterozygosity, polymorphic information content (PIC) and Nei's index were 5.96, 1.59, 0.43, 0.35 and 0.35, respectively. The UPGMA dendrogram based on Nei's genetic distance grouped the whole germplasm into 7 distinct clusters. The analysis of molecular variance (AMOVA) revealed that 89% of total variation occurred within population, while 11% were found among populations. Based on the constructed dendrogram using ISSR markers those accessions that are far from each other by virtue of genetic origin and diversity index (like Ac1 and Ac42; Ac19 and Ac45; Ac9 and Ac23; Ac18 and A25; Ac24 and Ac18) are strongly recommended to select as parent for future breeding program to develop high yielding and stress tolerant purslane variety in contribution to global food security.
Copyright © 2014 Académie des sciences. Published by Elsevier SAS. All rights reserved.

Entities:  

Keywords:  AMOVA; Dendrogram; Genetic diversity; ISSR markers; Purslane (Portulaca oleracea L.)

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Year:  2014        PMID: 25468001     DOI: 10.1016/j.crvi.2014.10.007

Source DB:  PubMed          Journal:  C R Biol        ISSN: 1631-0691            Impact factor:   1.583


  1 in total

1.  Genetic Diversity of Torch Ginger (Etlingera elatior) Germplasm Revealed by ISSR and SSR Markers.

Authors:  Nor Asiah Ismail; M Y Rafii; T M M Mahmud; M M Hanafi; Gous Miah
Journal:  Biomed Res Int       Date:  2019-05-06       Impact factor: 3.411

  1 in total

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