Literature DB >> 25466224

Application of the RIMARC algorithm to a large data set of action potentials and clinical parameters for risk prediction of atrial fibrillation.

Ursula Ravens1, Deniz Katircioglu-Öztürk, Erich Wettwer, Torsten Christ, Dobromir Dobrev, Niels Voigt, Claire Poulet, Simone Loose, Jana Simon, Agnes Stein, Klaus Matschke, Michael Knaut, Emre Oto, Ali Oto, H Altay Güvenir.   

Abstract

Ex vivo recorded action potentials (APs) in human right atrial tissue from patients in sinus rhythm (SR) or atrial fibrillation (AF) display a characteristic spike-and-dome or triangular shape, respectively, but variability is huge within each rhythm group. The aim of our study was to apply the machine-learning algorithm ranking instances by maximizing the area under the ROC curve (RIMARC) to a large data set of 480 APs combined with retrospectively collected general clinical parameters and to test whether the rules learned by the RIMARC algorithm can be used for accurately classifying the preoperative rhythm status. APs were included from 221 SR and 158 AF patients. During a learning phase, the RIMARC algorithm established a ranking order of 62 features by predictive value for SR or AF. The model was then challenged with an additional test set of features from 28 patients in whom rhythm status was blinded. The accuracy of the risk prediction for AF by the model was very good (0.93) when all features were used. Without the seven AP features, accuracy still reached 0.71. In conclusion, we have shown that training the machine-learning algorithm RIMARC with an experimental and clinical data set allows predicting a classification in a test data set with high accuracy. In a clinical setting, this approach may prove useful for finding hypothesis-generating associations between different parameters.

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Year:  2014        PMID: 25466224     DOI: 10.1007/s11517-014-1232-0

Source DB:  PubMed          Journal:  Med Biol Eng Comput        ISSN: 0140-0118            Impact factor:   2.602


  22 in total

1.  Mechanoelectrical coupling enhances initiation and affects perpetuation of atrial fibrillation during acute atrial dilation.

Authors:  Nico H L Kuijpers; Mark Potse; Peter M van Dam; Huub M M ten Eikelder; Sander Verheule; Frits W Prinzen; Ulrich Schotten
Journal:  Heart Rhythm       Date:  2010-11-12       Impact factor: 6.343

2.  Electrophysiologic properties of isolated preparations of human atrial myocardium.

Authors:  H Gelband; H L Bush; M R Rosen; R J Myerburg; B F Hoffman
Journal:  Circ Res       Date:  1972-03       Impact factor: 17.367

Review 3.  Comprehensive risk reduction in patients with atrial fibrillation: emerging diagnostic and therapeutic options--a report from the 3rd Atrial Fibrillation Competence NETwork/European Heart Rhythm Association consensus conference.

Authors:  Paulus Kirchhof; Gregory Y H Lip; Isabelle C Van Gelder; Jeroen Bax; Elaine Hylek; Stefan Kaab; Ulrich Schotten; Karl Wegscheider; Giuseppe Boriani; Axel Brandes; Michael Ezekowitz; Hans Diener; Laurent Haegeli; Hein Heidbuchel; Deirdre Lane; Luis Mont; Stephan Willems; Paul Dorian; Maria Aunes-Jansson; Carina Blomstrom-Lundqvist; Maria Borentain; Stefanie Breitenstein; Martina Brueckmann; Nilo Cater; Andreas Clemens; Dobromir Dobrev; Sergio Dubner; Nils G Edvardsson; Leif Friberg; Andreas Goette; Michele Gulizia; Robert Hatala; Jenny Horwood; Lukas Szumowski; Lukas Kappenberger; Josef Kautzner; Angelika Leute; Trudie Lobban; Ralf Meyer; Jay Millerhagen; John Morgan; Felix Muenzel; Michael Nabauer; Christoph Baertels; Michael Oeff; Dieter Paar; Juergen Polifka; Ursula Ravens; Ludger Rosin; W Stegink; Gerhard Steinbeck; Panos Vardas; Alphons Vincent; Maureen Walter; Günter Breithardt; A John Camm
Journal:  Europace       Date:  2011-07-26       Impact factor: 5.214

4.  Atrial L-type Ca2+ currents and human atrial fibrillation.

Authors:  D R Van Wagoner; A L Pond; M Lamorgese; S S Rossie; P M McCarthy; J M Nerbonne
Journal:  Circ Res       Date:  1999-09-03       Impact factor: 17.367

5.  In-silico modeling of atrial repolarization in normal and atrial fibrillation remodeled state.

Authors:  Martin W Krueger; Andreas Dorn; David U J Keller; Fredrik Holmqvist; Jonas Carlson; Pyotr G Platonov; Kawal S Rhode; Reza Razavi; Gunnar Seemann; Olaf Dössel
Journal:  Med Biol Eng Comput       Date:  2013-07-18       Impact factor: 2.602

6.  Isolation of single atrial and ventricular cells from the human heart.

Authors:  J O Bustamante; T Watanabe; D A Murphy; T F McDonald
Journal:  Can Med Assoc J       Date:  1982-04-01       Impact factor: 8.262

7.  Age-associated increases in pulmonary artery systolic pressure in the general population.

Authors:  Carolyn S P Lam; Barry A Borlaug; Garvan C Kane; Felicity T Enders; Richard J Rodeheffer; Margaret M Redfield
Journal:  Circulation       Date:  2009-05-11       Impact factor: 29.690

8.  Functional role of cholinoceptors and purinoceptors in human isolated atrial and ventricular heart muscle.

Authors:  H Jakob; H Oelert; J Rupp; H Nawrath
Journal:  Br J Pharmacol       Date:  1989-08       Impact factor: 8.739

9.  Experimentally calibrated population of models predicts and explains intersubject variability in cardiac cellular electrophysiology.

Authors:  Oliver J Britton; Alfonso Bueno-Orovio; Karel Van Ammel; Hua Rong Lu; Rob Towart; David J Gallacher; Blanca Rodriguez
Journal:  Proc Natl Acad Sci U S A       Date:  2013-05-20       Impact factor: 11.205

10.  Cellular bases for human atrial fibrillation.

Authors:  Antony J Workman; Kathleen A Kane; Andrew C Rankin
Journal:  Heart Rhythm       Date:  2008-01-17       Impact factor: 6.343

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  8 in total

Review 1.  Report on the Ion Channel Symposium : Organized by the German Cardiac Society Working Group on Cellular Electrophysiology (AG 18).

Authors:  Niels Voigt; Fleur Mason; Dierk Thomas
Journal:  Herzschrittmacherther Elektrophysiol       Date:  2018-01-08

2.  Populations of in silico myocytes and tissues reveal synergy of multiatrial-predominant K+ -current block in atrial fibrillation.

Authors:  Haibo Ni; Alex Fogli Iseppe; Wayne R Giles; Sanjiv M Narayan; Henggui Zhang; Andrew G Edwards; Stefano Morotti; Eleonora Grandi
Journal:  Br J Pharmacol       Date:  2020-08-09       Impact factor: 8.739

Review 3.  Cardiac fibroblasts : Active players in (atrial) electrophysiology?

Authors:  Alexander Klesen; Dorothee Jakob; Ramona Emig; Peter Kohl; Ursula Ravens; Rémi Peyronnet
Journal:  Herzschrittmacherther Elektrophysiol       Date:  2018-02-01

Review 4.  Computational models of atrial cellular electrophysiology and calcium handling, and their role in atrial fibrillation.

Authors:  Jordi Heijman; Pegah Erfanian Abdoust; Niels Voigt; Stanley Nattel; Dobromir Dobrev
Journal:  J Physiol       Date:  2015-12-28       Impact factor: 5.182

5.  Modelling variability in cardiac electrophysiology: a moment-matching approach.

Authors:  Eliott Tixier; Damiano Lombardi; Blanca Rodriguez; Jean-Frédéric Gerbeau
Journal:  J R Soc Interface       Date:  2017-08       Impact factor: 4.118

Review 6.  Computational Modeling of Electrophysiology and Pharmacotherapy of Atrial Fibrillation: Recent Advances and Future Challenges.

Authors:  Márcia Vagos; Ilsbeth G M van Herck; Joakim Sundnes; Hermenegild J Arevalo; Andrew G Edwards; Jussi T Koivumäki
Journal:  Front Physiol       Date:  2018-09-04       Impact factor: 4.566

7.  Improving performance of 3D speckle tracking in arterial hypertension and paroxysmal atrial fibrillation by using novel strain parameters.

Authors:  G Esposito; P Piras; A Evangelista; V Nuzzi; P Nardinocchi; G Pannarale; C Torromeo; P E Puddu
Journal:  Sci Rep       Date:  2019-05-14       Impact factor: 4.379

Review 8.  A Heart for Diversity: Simulating Variability in Cardiac Arrhythmia Research.

Authors:  Haibo Ni; Stefano Morotti; Eleonora Grandi
Journal:  Front Physiol       Date:  2018-07-20       Impact factor: 4.566

  8 in total

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