Literature DB >> 25464122

Revisiting a dogma: the effect of volume exclusion in molecular crowding.

Anastasia Politou1, Piero Andrea Temussi2.   

Abstract

We critically re-examined the mechanisms that affect protein stability under crowding conditions. Much attention has been paid in recent years to the effects of molecular crowding on the properties of proteins in the cellular milieu. It has been suggested that volume exclusion disfavors the unfolded state since this is more expanded than the folded one, leading to an overall stabilizing effect. Experimental results suggest however that the influence of crowding on protein stability is smaller than expected. Besides, crowding can in some cases destabilize proteins. Destabilization has been attributed to weak interactions of crowders with the protein under study. We argue against these dogmas that overemphasizing the effect of volume expansion or the role of soft interactions may mask the actual relevance of volume exclusion.
Copyright © 2014 Elsevier Ltd. All rights reserved.

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Year:  2014        PMID: 25464122     DOI: 10.1016/j.sbi.2014.10.005

Source DB:  PubMed          Journal:  Curr Opin Struct Biol        ISSN: 0959-440X            Impact factor:   6.809


  10 in total

1.  Relative Cosolute Size Influences the Kinetics of Protein-Protein Interactions.

Authors:  Laurel Hoffman; Xu Wang; Hugo Sanabria; Margaret S Cheung; John A Putkey; M Neal Waxham
Journal:  Biophys J       Date:  2015-08-04       Impact factor: 4.033

Review 2.  To be disordered or not to be disordered: is that still a question for proteins in the cell?

Authors:  Kris Pauwels; Pierre Lebrun; Peter Tompa
Journal:  Cell Mol Life Sci       Date:  2017-06-13       Impact factor: 9.261

3.  Intrinsically Disordered Protein Exhibits Both Compaction and Expansion under Macromolecular Crowding.

Authors:  Anthony Banks; Sanbo Qin; Kevin L Weiss; Christopher B Stanley; Huan-Xiang Zhou
Journal:  Biophys J       Date:  2018-03-13       Impact factor: 4.033

4.  Thermodynamics of Macromolecular Association in Heterogeneous Crowding Environments: Theoretical and Simulation Studies with a Simplified Model.

Authors:  Tadashi Ando; Isseki Yu; Michael Feig; Yuji Sugita
Journal:  J Phys Chem B       Date:  2016-11-15       Impact factor: 2.991

5.  Crowding-induced protein destabilization in the absence of soft attractions.

Authors:  Saman Bazmi; Stefan Wallin
Journal:  Biophys J       Date:  2022-06-07       Impact factor: 3.699

6.  The Differential Response of Proteins to Macromolecular Crowding.

Authors:  Michela Candotti; Modesto Orozco
Journal:  PLoS Comput Biol       Date:  2016-07-29       Impact factor: 4.475

Review 7.  Melting Down Protein Stability: PAPS Synthase 2 in Patients and in a Cellular Environment.

Authors:  Oliver Brylski; Simon Ebbinghaus; Jonathan W Mueller
Journal:  Front Mol Biosci       Date:  2019-05-03

8.  Pairing statistics and melting of random DNA oligomers: Finding your partner in superdiverse environments.

Authors:  Simone Di Leo; Stefano Marni; Carlos A Plata; Tommaso P Fraccia; Gregory P Smith; Amos Maritan; Samir Suweis; Tommaso Bellini
Journal:  PLoS Comput Biol       Date:  2022-04-11       Impact factor: 4.475

9.  Optimal molecular crowding accelerates group II intron folding and maximizes catalysis.

Authors:  Bishnu P Paudel; Erica Fiorini; Richard Börner; Roland K O Sigel; David S Rueda
Journal:  Proc Natl Acad Sci U S A       Date:  2018-11-05       Impact factor: 11.205

10.  An optimized strategy to measure protein stability highlights differences between cold and hot unfolded states.

Authors:  Caterina Alfano; Domenico Sanfelice; Stephen R Martin; Annalisa Pastore; Piero Andrea Temussi
Journal:  Nat Commun       Date:  2017-05-18       Impact factor: 14.919

  10 in total

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