Literature DB >> 25459490

Prediction of Phospholipid-Water Partition Coefficients of Ionic Organic Chemicals Using the Mechanistic Model COSMOmic.

Kai Bittermann1, Simon Spycher2,3, Satoshi Endo1, Larissa Pohler3, Uwe Huniar3, Kai-Uwe Goss1,4, Andreas Klamt3,5.   

Abstract

The partition coefficient of chemicals from water to phospholipid membrane, K(lipw), is of central importance for various fields. For neutral organic molecules, log K(lipw) correlates with the log of bulk solvent-water partition coefficients such as the octanol-water partition coefficient. However, this is not the case for charged compounds, for which a mechanistic modeling approach is highly necessary. In this work, we extend the model COSMOmic, which adapts the COSMO-RS theory for anisotropic phases and has been shown to reliably predict K(lipw) for neutral compounds, to the use of ionic compounds. To make the COSMOmic model applicable for ionic solutes, we implemented the internal membrane dipole potential in COSMOmic. We empirically optimized the potential with experimental K(lipw) data of 161 neutral and 75 ionic compounds, yielding potential shapes that agree well with experimentally determined potentials from the literature. This model refinement has no negative effect on the prediction accuracy of neutral compounds (root-mean-square error, RMSE = 0.62 log units), while it highly improves the prediction of ions (RMSE = 0.70 log units). The refined COSMOmic is, to our knowledge, the first mechanistic model that predicts K(lipw) of both ionic and neutral species with accuracies better than 1 log unit.

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Year:  2014        PMID: 25459490     DOI: 10.1021/jp509348a

Source DB:  PubMed          Journal:  J Phys Chem B        ISSN: 1520-5207            Impact factor:   2.991


  11 in total

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2.  Phospholipid Levels Predict the Tissue Distribution of Poly- and Perfluoroalkyl Substances in a Marine Mammal.

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Review 3.  Assessing the bioaccumulation potential of ionizable organic compounds: Current knowledge and research priorities.

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Journal:  Environ Toxicol Chem       Date:  2016-12-19       Impact factor: 3.742

4.  Passive Permeability of Planar Lipid Bilayers to Organic Anions.

Authors:  Andrea Ebert; Christof Hannesschlaeger; Kai-Uwe Goss; Peter Pohl
Journal:  Biophys J       Date:  2018-10-02       Impact factor: 4.033

5.  Functional Group Distributions, Partition Coefficients, and Resistance Factors in Lipid Bilayers Using Site Identification by Ligand Competitive Saturation.

Authors:  Christoffer Lind; Poonam Pandey; Richard W Pastor; Alexander D MacKerell
Journal:  J Chem Theory Comput       Date:  2021-04-30       Impact factor: 6.006

6.  Predicting apparent passive permeability of Caco-2 and MDCK cell-monolayers: A mechanistic model.

Authors:  Kai Bittermann; Kai-Uwe Goss
Journal:  PLoS One       Date:  2017-12-27       Impact factor: 3.240

7.  Sorption of Cationic Surfactants to Artificial Cell Membranes: Comparing Phospholipid Bilayers with Monolayer Coatings and Molecular Simulations.

Authors:  Niels Timmer; Steven T J Droge
Journal:  Environ Sci Technol       Date:  2017-02-22       Impact factor: 9.028

8.  Molecular simulations of lipid membrane partitioning and translocation by bacterial quorum sensing modulators.

Authors:  Tianyi Jin; Samarthaben J Patel; Reid C Van Lehn
Journal:  PLoS One       Date:  2021-02-09       Impact factor: 3.240

9.  Charged Small Molecule Binding to Membranes in MD Simulations Evaluated against NMR Experiments.

Authors:  Ricky Nencini; O H Samuli Ollila
Journal:  J Phys Chem B       Date:  2022-09-05       Impact factor: 3.466

Review 10.  The Dessau workshop on bioaccumulation: state of the art, challenges and regulatory implications.

Authors:  Gabriele Treu; Wiebke Drost; Ulrich Jöhncke; Caren Rauert; Christian Schlechtriem
Journal:  Environ Sci Eur       Date:  2015-12-21       Impact factor: 5.893

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