Literature DB >> 2545673

Overproduction and preliminary crystallographic study of ribonuclease H from Escherichia coli.

S Kanaya1, A Kohara, M Miyagawa, T Matsuzaki, K Morikawa, M Ikehara.   

Abstract

To facilitate the preparation of ribonuclease H from Escherichia coli in an amount sufficient for crystallographic studies, we have constructed an overproduction system for the enzyme. The structural gene for the enzyme was subcloned from pSK750 (Kanaya, S., and Crouch, R. J. (1983) J. Biol. Chem. 258, 1276-1281) to make a plasmid vector pPL801, in which the gene was under the control of bacteriophage lambda PL promoter. Thermal induction of the gene accumulated the enzyme in E. coli N4830-1 to approximately 8% of the total cytosolic protein. The level of production of the enzyme in N4830-1 harboring pPL801 was 14 mg/liter culture, which was 3000 times as high as that in the host cell. The enzyme was purified with a yield of more than 80% and crystallized by utilizing the property that the solubility of the enzyme decreased at pH values close to its isoelectric point (pI = 9). Crystals were grown by successive seeding (hanging drop method) for x-ray crystallographic analysis. The crystals belong to space group P212121 with unit cell dimensions of alpha = 44.1 A, b = 87.0 A, c = 35.5 A and contain one molecule in an asymmetric unit. They diffracted x-rays beyond 2.5 A resolution.

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Year:  1989        PMID: 2545673

Source DB:  PubMed          Journal:  J Biol Chem        ISSN: 0021-9258            Impact factor:   5.157


  11 in total

1.  How does RNase H recognize a DNA.RNA hybrid?

Authors:  H Nakamura; Y Oda; S Iwai; H Inoue; E Ohtsuka; S Kanaya; S Kimura; C Katsuda; K Katayanagi; K Morikawa
Journal:  Proc Natl Acad Sci U S A       Date:  1991-12-15       Impact factor: 11.205

2.  Crystallization and preliminary X-ray analysis of Escherichia coli RNase HI-dsRNA complexes.

Authors:  Lioudmila V Loukachevitch; Martin Egli
Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun       Date:  2007-01-17

3.  Isolation and characterization of a second RNase H (RNase HII) of Escherichia coli K-12 encoded by the rnhB gene.

Authors:  M Itaya
Journal:  Proc Natl Acad Sci U S A       Date:  1990-11       Impact factor: 11.205

4.  Binding of metal ions to E. coli RNase HI observed by 1H-15N heteronuclear 2D NMR.

Authors:  Y Oda; H Nakamura; S Kanaya; M Ikehara
Journal:  J Biomol NMR       Date:  1991-09       Impact factor: 2.835

5.  Role of cysteine residues in ribonuclease H from Escherichia coli. Site-directed mutagenesis and chemical modification.

Authors:  S Kanaya; S Kimura; C Katsuda; M Ikehara
Journal:  Biochem J       Date:  1990-10-01       Impact factor: 3.857

6.  Cleavage of the HIV-1 p66 reverse transcriptase/RNase H by the p9 protease in vitro generates active p15 RNase H.

Authors:  T Schulze; M Nawrath; K Moelling
Journal:  Arch Virol       Date:  1991       Impact factor: 2.574

7.  Single-molecule Forster resonance energy transfer study of protein dynamics under denaturing conditions.

Authors:  Elza V Kuzmenkina; Colin D Heyes; G Ulrich Nienhaus
Journal:  Proc Natl Acad Sci U S A       Date:  2005-10-12       Impact factor: 11.205

8.  Identification of the first archaeal Type 1 RNase H gene from Halobacterium sp. NRC-1: archaeal RNase HI can cleave an RNA-DNA junction.

Authors:  Naoto Ohtani; Hiroshi Yanagawa; Masaru Tomita; Mitsuhiro Itaya
Journal:  Biochem J       Date:  2004-08-01       Impact factor: 3.857

9.  1H NMR studies of deuterated ribonuclease HI selectively labeled with protonated amino acids.

Authors:  Y Oda; H Nakamura; T Yamazaki; K Nagayama; M Yoshida; S Kanaya; M Ikehara
Journal:  J Biomol NMR       Date:  1992-03       Impact factor: 2.835

10.  Sequence-specific cleavage of small-subunit (SSU) rRNA with oligonucleotides and RNase H: a rapid and simple approach to SSU rRNA-based quantitative detection of microorganisms.

Authors:  Yutaka Uyeno; Yuji Sekiguchi; Akiko Sunaga; Hiroki Yoshida; Yoichi Kamagata
Journal:  Appl Environ Microbiol       Date:  2004-06       Impact factor: 4.792

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