Literature DB >> 25453824

As time goes by: KRABs evolve to KAP endogenous retroelements.

Michael Imbeault1, Didier Trono2.   

Abstract

Retroelements, constituting about 50% of the human genome, both contribute to its evolution and threaten its integrity and are thus silenced during development. Jacobs et al. (2014) identify sequence-specific KRAB-ZNF proteins that repress subsets of L1 and SVA retrotransposons in humans, highlighting the evolutionary interplay between retroelements and their hosts.
Copyright © 2014 Elsevier Inc. All rights reserved.

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Year:  2014        PMID： 25453824      PMCID： PMC4892340          DOI： 10.1016/j.devcel.2014.10.019

Source DB:  PubMed          Journal:  Dev Cell        ISSN： 1534-5807            Impact factor:   12.270


  13 in total

1.  Adaptive evolution in LINE-1 retrotransposons.

Authors:  S Boissinot; A V Furano
Journal:  Mol Biol Evol       Date:  2001-12       Impact factor: 16.240

2.  Somatic mosaicism in neuronal precursor cells mediated by L1 retrotransposition.

Authors:  Alysson R Muotri; Vi T Chu; Maria C N Marchetto; Wei Deng; John V Moran; Fred H Gage
Journal:  Nature       Date:  2005-06-16       Impact factor: 49.962

3.  Coevolution of retroelements and tandem zinc finger genes.

Authors:  James H Thomas; Sean Schneider
Journal:  Genome Res       Date:  2011-07-22       Impact factor: 9.043

4.  Differences in human and chimpanzee gene expression patterns define an evolving network of transcription factors in brain.

Authors:  Katja Nowick; Tim Gernat; Eivind Almaas; Lisa Stubbs
Journal:  Proc Natl Acad Sci U S A       Date:  2009-12-10       Impact factor: 11.205

5.  TRIM28 repression of retrotransposon-based enhancers is necessary to preserve transcriptional dynamics in embryonic stem cells.

Authors:  Helen M Rowe; Adamandia Kapopoulou; Andrea Corsinotti; Liana Fasching; Todd S Macfarlan; Yara Tarabay; Stéphane Viville; Johan Jakobsson; Samuel L Pfaff; Didier Trono
Journal:  Genome Res       Date:  2012-12-10       Impact factor: 9.043

6.  Differential L1 regulation in pluripotent stem cells of humans and apes.

Authors:  Maria C N Marchetto; Iñigo Narvaiza; Ahmet M Denli; Christopher Benner; Thomas A Lazzarini; Jason L Nathanson; Apuã C M Paquola; Keval N Desai; Roberto H Herai; Matthew D Weitzman; Gene W Yeo; Alysson R Muotri; Fred H Gage
Journal:  Nature       Date:  2013-10-23       Impact factor: 49.962

7.  An evolutionary arms race between KRAB zinc-finger genes ZNF91/93 and SVA/L1 retrotransposons.

Authors:  Frank M J Jacobs; David Greenberg; Ngan Nguyen; Maximilian Haeussler; Adam D Ewing; Sol Katzman; Benedict Paten; Sofie R Salama; David Haussler
Journal:  Nature       Date:  2014-09-28       Impact factor: 49.962

8.  Interplay of TRIM28 and DNA methylation in controlling human endogenous retroelements.

Authors:  Priscilla Turelli; Nathaly Castro-Diaz; Flavia Marzetta; Adamandia Kapopoulou; Charlène Raclot; Julien Duc; Vannary Tieng; Simon Quenneville; Didier Trono
Journal:  Genome Res       Date:  2014-05-30       Impact factor: 9.043

9.  Embryonic stem cells use ZFP809 to silence retroviral DNAs.

Authors:  Daniel Wolf; Stephen P Goff
Journal:  Nature       Date:  2009-03-08       Impact factor: 49.962

10.  Evolutionally dynamic L1 regulation in embryonic stem cells.

Authors:  Nathaly Castro-Diaz; Gabriela Ecco; Andrea Coluccio; Adamandia Kapopoulou; Benyamin Yazdanpanah; Marc Friedli; Julien Duc; Suk Min Jang; Priscilla Turelli; Didier Trono
Journal:  Genes Dev       Date:  2014-06-17       Impact factor: 11.361
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  8 in total

1.  Transcriptional Silencing of Moloney Murine Leukemia Virus in Human Embryonic Carcinoma Cells.

Authors:  Gary Z Wang; Stephen P Goff
Journal:  J Virol       Date:  2016-12-16       Impact factor: 5.103

2.  Genomic landscape of CpG rich elements in human.

Authors:  Vladimir N Babenko; Irina V Chadaeva; Yuriy L Orlov
Journal:  BMC Evol Biol       Date:  2017-02-07       Impact factor: 3.260

Review 3.  KRAB zinc finger proteins.

Authors:  Gabriela Ecco; Michael Imbeault; Didier Trono
Journal:  Development       Date:  2017-08-01       Impact factor: 6.868

4.  Somatically Acquired LINE-1 Insertions in Normal Esophagus Undergo Clonal Expansion in Esophageal Squamous Cell Carcinoma.

Authors:  Tara T Doucet-O'Hare; Reema Sharma; Nemanja Rodić; Robert A Anders; Kathleen H Burns; Haig H Kazazian
Journal:  Hum Mutat       Date:  2016-07-13       Impact factor: 4.878

Review 5.  New Insights Into the Molecular Mechanisms and Immune Control of Cytomegalovirus Reactivation.

Authors:  Taylor A Heald-Sargent; Eleonora Forte; Xuefeng Liu; Edward B Thorp; Michael M Abecassis; Zheng Jenny Zhang; Mary A Hummel
Journal:  Transplantation       Date:  2020-05       Impact factor: 5.385

Review 6.  TFs for TEs: the transcription factor repertoire of mammalian transposable elements.

Authors:  Clara Hermant; Maria-Elena Torres-Padilla
Journal:  Genes Dev       Date:  2021-01-01       Impact factor: 11.361

7.  Conserved paradoxical relationships among the evolutionary, structural and expressional features of KRAB zinc-finger proteins reveal their special functional characteristics.

Authors:  Pan Shen; Aishi Xu; Yushan Hou; Huqiang Wang; Chao Gao; Fuchu He; Dong Yang
Journal:  BMC Mol Cell Biol       Date:  2021-01-22

Review 8.  Ten things you should know about transposable elements.

Authors:  Guillaume Bourque; Kathleen H Burns; Mary Gehring; Vera Gorbunova; Andrei Seluanov; Molly Hammell; Michaël Imbeault; Zsuzsanna Izsvák; Henry L Levin; Todd S Macfarlan; Dixie L Mager; Cédric Feschotte
Journal:  Genome Biol       Date:  2018-11-19       Impact factor: 13.583
  8 in total

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