Literature DB >> 25448937

Density functional theory (DFT) and natural bond orbital (NBO) study of vibrational spectra and intramolecular hydrogen bond interaction of L-ornithine-L-aspartate.

Linwei Li1, Chengjun Wu1, Zhiqiang Wang1, Lixia Zhao1, Zhen Li1, Changshan Sun2, Tiemin Sun3.   

Abstract

In this study, exhaustive conformations of (S)-4-amino-4-carboxybutan-1-aminium (S)-3-amino-3-carboxypropanoate (LOLA) have been scanned. Experimental and theoretical studies on the structure and vibrations of the title compound are presented. The optimized molecular structure, vibrational wavenumbers, Mulliken atomic charges, natural bond orbital (NBO) and molecular electrostatic potential studies have been performed by density functional theory (DFT) using B3LYP method with the 6-311++G(d,p) basis set. Computed X-ray powder diffraction (XRPD) data has been carried out by DFT calculations and ab initio from measured XRPD finding. The LOLA molecular geometry has been determined which exists in the form of salt by intramolecular H-bonds and ionic bonding. Moreover, calculated vibrational frequencies were applied to simulate IR and Raman spectra of the title compound which showed excellent agreement with observed spectra. Reliable vibrational assignments have been made on the basis of potential energy distribution (PED) and 0.992 has been obtained by least squares method which is the uniform scaled factor for theoretical frequencies at 6-311++G(d,p) basis set. In addition, the hydrogen bonding in LOLA molecule has been explored by calculation of the hyperconjugative charge transfer interaction on [LP X-σ(*)(Y-H)], under NBO analysis, Mulliken atomic charge analysis, molecular electrostatic potential map (MEP) and vibrational spectra. Finally, HOMO-LUMO of the title compound has been plotted for predicting reactive sites.
Copyright © 2014 Elsevier B.V. All rights reserved.

Entities:  

Keywords:  DFT; Infrared; NBO; Vibrational assignment; X-ray powder diffraction; l-Ornithine–l-Aspartate

Mesh:

Substances:

Year:  2014        PMID: 25448937     DOI: 10.1016/j.saa.2014.08.153

Source DB:  PubMed          Journal:  Spectrochim Acta A Mol Biomol Spectrosc        ISSN: 1386-1425            Impact factor:   4.098


  4 in total

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Authors:  Muhammad Khalid; Akbar Ali; Muhammad Fayyaz Ur Rehman; Muhammad Mustaqeem; Shehbaz Ali; Muhammad Usman Khan; Sumreen Asim; Naseeb Ahmad; Muhammad Saleem
Journal:  ACS Omega       Date:  2020-05-27
  4 in total

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