Literature DB >> 25447886

Improvement in the DNA sequencing of genomes bearing long repeated elements.

Antony T Vincent1, Brian Boyle, Nicolas Derome, Steve J Charette.   

Abstract

When using next-generation sequencing methods, obtaining a single and complete bacterial chromosomic sequence may be challenging especially for bacteria harboring multiple repeated sequences. Here we present a one-step procedure to optimize the sequencing process in order to obtain a single chromosomic scaffold.
Copyright © 2014 Elsevier B.V. All rights reserved.

Mesh：

Year:  2014        PMID： 25447886     DOI： 10.1016/j.mimet.2014.10.016

Source DB:  PubMed          Journal:  J Microbiol Methods        ISSN： 0167-7012            Impact factor:   2.363


  8 in total

1.  Increasing genomic diversity and evidence of constrained lifestyle evolution due to insertion sequences in Aeromonas salmonicida.

Authors:  Antony T Vincent; Mélanie V Trudel; Luca Freschi; Vandan Nagar; Cynthia Gagné-Thivierge; Roger C Levesque; Steve J Charette
Journal:  BMC Genomics       Date:  2016-01-12       Impact factor: 3.969

2.  The mosaic architecture of Aeromonas salmonicida subsp. salmonicida pAsa4 plasmid and its consequences on antibiotic resistance.

Authors:  Katherine H Tanaka; Antony T Vincent; Mélanie V Trudel; Valérie E Paquet; Michel Frenette; Steve J Charette
Journal:  PeerJ       Date:  2016-10-27       Impact factor: 2.984

3.  Plasmid composition in Aeromonas salmonicida subsp. salmonicida 01-B526 unravels unsuspected type three secretion system loss patterns.

Authors:  Katherine H Tanaka; Antony T Vincent; Jean-Guillaume Emond-Rheault; Marcin Adamczuk; Michel Frenette; Steve J Charette
Journal:  BMC Genomics       Date:  2017-07-12       Impact factor: 3.969

4.  Completion of genome of Aeromonas salmonicida subsp. salmonicida 01-B526 reveals how sequencing technologies can influence sequence quality and result interpretations.

Authors:  A T Vincent; S J Charette
Journal:  New Microbes New Infect       Date:  2018-05-31

5.  Revisiting the taxonomy and evolution of pathogenicity of the genus Leptospira through the prism of genomics.

Authors:  Antony T Vincent; Olivier Schiettekatte; Cyrille Goarant; Vasantha Kumari Neela; Eve Bernet; Roman Thibeaux; Nabilah Ismail; Mohd Khairul Nizam Mohd Khalid; Fairuz Amran; Toshiyuki Masuzawa; Ryo Nakao; Anissa Amara Korba; Pascale Bourhy; Frederic J Veyrier; Mathieu Picardeau
Journal:  PLoS Negl Trop Dis       Date:  2019-05-23

6.  To Be or Not to Be Mesophilic, That Is the Question for Aeromonas salmonicida.

Authors:  Antony T Vincent; Steve J Charette
Journal:  Microorganisms       Date:  2022-01-22

7.  Diversity and Homogeneity among Small Plasmids of Aeromonas salmonicida subsp. salmonicida Linked with Geographical Origin.

Authors:  Sabrina A Attéré; Antony T Vincent; Mélanie V Trudel; Romain Chanut; Steve J Charette
Journal:  Front Microbiol       Date:  2015-11-23       Impact factor: 5.640

8.  Diversity of antibiotic-resistance genes in Canadian isolates of Aeromonas salmonicida subsp. salmonicida: dominance of pSN254b and discovery of pAsa8.

Authors:  Mélanie V Trudel; Antony T Vincent; Sabrina A Attéré; Myriam Labbé; Nicolas Derome; Alexander I Culley; Steve J Charette
Journal:  Sci Rep       Date:  2016-10-18       Impact factor: 4.379
  8 in total

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