Literature DB >> 25447462

Method for measuring lipid mediators, proteins, and messenger RNAs from a single tissue specimen.

Jessica A Cottrell1, Hsuan-Ni Lin2, J Patrick O'Connor3.   

Abstract

This article describes a new method for extracting RNA, protein, and lipid mediators from a single tissue specimen. Specifically, mouse bone fracture callus specimens were extracted into a single solution that was processed using three different procedures to measure messenger RNA (mRNA) levels by reverse transcription-quantitative polymerase chain reaction (RTqPCR), cytokines and growth factors using an xMAP method, and lipid mediators by liquid chromatography-tandem mass spectrometry (LC-MS/MS). This method has several advantages because it decreases the number of animals necessary for experimentation, allows division of the sample from a homogeneous mixture that reduces sample variability, and uses a solution that protects the integrity of the macromolecules during storage.
Copyright © 2014 Elsevier Inc. All rights reserved.

Entities:  

Keywords:  Bone regeneration; Fracture healing; Lipid mediator; Metabolomics

Mesh:

Substances:

Year:  2014        PMID: 25447462      PMCID: PMC4257868          DOI: 10.1016/j.ab.2014.10.004

Source DB:  PubMed          Journal:  Anal Biochem        ISSN: 0003-2697            Impact factor:   3.365


  41 in total

Review 1.  Multiplexed particle-based flow cytometric assays.

Authors:  D A Vignali
Journal:  J Immunol Methods       Date:  2000-09-21       Impact factor: 2.303

2.  Targeted lipidomics using electron capture atmospheric pressure chemical ionization mass spectrometry.

Authors:  Seon Hwa Lee; Michelle V Williams; Raymond N DuBois; Ian A Blair
Journal:  Rapid Commun Mass Spectrom       Date:  2003       Impact factor: 2.419

3.  Sensitivity and accuracy of quantitative real-time polymerase chain reaction using SYBR green I depends on cDNA synthesis conditions.

Authors:  Ronald H Lekanne Deprez; Arnoud C Fijnvandraat; Jan M Ruijter; Antoon F M Moorman
Journal:  Anal Biochem       Date:  2002-08-01       Impact factor: 3.365

4.  Determination of variations in gene expression during fracture healing.

Authors:  Gregor Balaburski; J Patrick O'Connor
Journal:  Acta Orthop Scand       Date:  2003-02

5.  Characterization of a closed femur fracture model in mice.

Authors:  Michaele B Manigrasso; J Patrick O'Connor
Journal:  J Orthop Trauma       Date:  2004 Nov-Dec       Impact factor: 2.512

6.  Differential temporal expression of members of the transforming growth factor beta superfamily during murine fracture healing.

Authors:  Tae-Joon Cho; Louis C Gerstenfeld; Thomas A Einhorn
Journal:  J Bone Miner Res       Date:  2002-03       Impact factor: 6.741

Review 7.  Fracture healing as a post-natal developmental process: molecular, spatial, and temporal aspects of its regulation.

Authors:  Louis C Gerstenfeld; Dennis M Cullinane; George L Barnes; Dana T Graves; Thomas A Einhorn
Journal:  J Cell Biochem       Date:  2003-04-01       Impact factor: 4.429

8.  Transcriptional profiling of bone regeneration. Insight into the molecular complexity of wound repair.

Authors:  Michael Hadjiargyrou; Frank Lombardo; Shanchuan Zhao; William Ahrens; Jungnam Joo; Hongshik Ahn; Mark Jurman; David W White; Clinton T Rubin
Journal:  J Biol Chem       Date:  2002-06-07       Impact factor: 5.157

9.  Cyclo-oxygenase 2 function is essential for bone fracture healing.

Authors:  Ann Marie Simon; Michaele Beth Manigrasso; J Patrick O'Connor
Journal:  J Bone Miner Res       Date:  2002-06       Impact factor: 6.741

10.  Determination of bioactive eicosanoids in brain tissue by a sensitive reversed-phase liquid chromatographic method with fluorescence detection.

Authors:  Hongfei Yue; Kenneth I Strauss; Michael R Borenstein; Mary F Barbe; Luella J Rossi; Susan A Jansen
Journal:  J Chromatogr B Analyt Technol Biomed Life Sci       Date:  2004-04-25       Impact factor: 3.205

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