Literature DB >> 25446836

Building high-resolution synthetic lethal networks: a 'Google map' of the cancer cell.

James M Paul1, Shaina D Templeton2, Akanksha Baharani2, Andrew Freywald3, Franco J Vizeacoumar4.   

Abstract

The most commonly used therapies for cancer involve delivering high doses of radiation or toxic chemicals to the patient that also cause substantial damage to normal tissue. To overcome this, researchers have recently resorted to a basic biological concept called 'synthetic lethality' (SL) that takes advantage of interactions between gene pairs. The identification of SL interactions is of considerable therapeutic interest because if a particular gene is SL with a tumor-causing mutation, then the targeting that gene carries therapeutic advantages. Mapping these interactions in the context of human cancer cells could hold the key to effective, targeted cancer treatments. In this review, we cover the recent advances that aim to identify these SL interactions using unbiased genetic screens.
Copyright © 2014 Elsevier Ltd. All rights reserved.

Entities:  

Keywords:  high resolution phenotypic interactions; negative genetic interaction; pooled shRNA and sgRNA screening; synthetic dosage lethality; synthetic lethality

Mesh:

Year:  2014        PMID: 25446836     DOI: 10.1016/j.molmed.2014.09.009

Source DB:  PubMed          Journal:  Trends Mol Med        ISSN: 1471-4914            Impact factor:   11.951


  12 in total

Review 1.  Mammalian SWI/SNF complexes in cancer: emerging therapeutic opportunities.

Authors:  Roodolph St Pierre; Cigall Kadoch
Journal:  Curr Opin Genet Dev       Date:  2017-04-06       Impact factor: 5.578

2.  Computational Prediction of Chemical Tools for Identification and Validation of Synthetic Lethal Interaction Networks.

Authors:  Kalpana K Bhanumathy; Omar Abuhussein; Frederick S Vizeacoumar; Andrew Freywald; Franco J Vizeacoumar; Christopher P Phenix; Eric W Price; Ran Cao
Journal:  Methods Mol Biol       Date:  2021

Review 3.  Therapeutic opportunities within the DNA damage response.

Authors:  Laurence H Pearl; Amanda C Schierz; Simon E Ward; Bissan Al-Lazikani; Frances M G Pearl
Journal:  Nat Rev Cancer       Date:  2015-03       Impact factor: 60.716

4.  Targeting synthetic lethality between the SRC kinase and the EPHB6 receptor may benefit cancer treatment.

Authors:  James M Paul; Behzad Toosi; Frederick S Vizeacoumar; Kalpana Kalyanasundaram Bhanumathy; Yue Li; Courtney Gerger; Amr El Zawily; Tanya Freywald; Deborah H Anderson; Darrell Mousseau; Rani Kanthan; Zhaolei Zhang; Franco J Vizeacoumar; Andrew Freywald
Journal:  Oncotarget       Date:  2016-08-02

5.  Network-assisted target identification for haploinsufficiency and homozygous profiling screens.

Authors:  Sheng Wang; Jian Peng
Journal:  PLoS Comput Biol       Date:  2017-06-02       Impact factor: 4.475

6.  Therapeutic relevance of the protein phosphatase 2A in cancer.

Authors:  Chelsea E Cunningham; Shuangshuang Li; Frederick S Vizeacoumar; Kalpana Kalyanasundaram Bhanumathy; Joo Sang Lee; Sreejit Parameswaran; Levi Furber; Omar Abuhussein; James M Paul; Megan McDonald; Shaina D Templeton; Hersh Shukla; Amr M El Zawily; Frederick Boyd; Nezeka Alli; Darrell D Mousseau; Ron Geyer; Keith Bonham; Deborah H Anderson; Jiong Yan; Li-Yuan Yu-Lee; Beth A Weaver; Maruti Uppalapati; Eytan Ruppin; Anna Sablina; Andrew Freywald; Franco J Vizeacoumar
Journal:  Oncotarget       Date:  2016-09-20

7.  Functional genomics identifies specific vulnerabilities in PTEN-deficient breast cancer.

Authors:  Yew Chung Tang; Szu-Chi Ho; Elisabeth Tan; Alvin Wei Tian Ng; John R McPherson; Germaine Yen Lin Goh; Bin Tean Teh; Frederic Bard; Steven G Rozen
Journal:  Breast Cancer Res       Date:  2018-03-22       Impact factor: 6.466

8.  Humanized yeast genetic interaction mapping predicts synthetic lethal interactions of FBXW7 in breast cancer.

Authors:  Morgan W B Kirzinger; Frederick S Vizeacoumar; Bjorn Haave; Cristina Gonzalez-Lopez; Keith Bonham; Anthony Kusalik; Franco J Vizeacoumar
Journal:  BMC Med Genomics       Date:  2019-07-27       Impact factor: 3.063

Review 9.  Evolving Therapeutic Strategies to Exploit Chromosome Instability in Cancer.

Authors:  Laura L Thompson; Lucile M-P Jeusset; Chloe C Lepage; Kirk J McManus
Journal:  Cancers (Basel)       Date:  2017-11-01       Impact factor: 6.639

10.  Enhancing the throughput and multiplexing capabilities of next generation sequencing for efficient implementation of pooled shRNA and CRISPR screens.

Authors:  Md Fahmid Islam; Atsushi Watanabe; Lai Wong; Conor Lazarou; Frederick S Vizeacoumar; Omar Abuhussein; Wayne Hill; Maruti Uppalapati; C Ronald Geyer; Franco J Vizeacoumar
Journal:  Sci Rep       Date:  2017-04-21       Impact factor: 4.379

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