Literature DB >> 25442853

Polyphasic feedback enables tunable cellular timers.

Joe H Levine1, Michael B Elowitz2.   

Abstract

Cellular 'timers' provide an important function in living cells. Timers help cells defer their responses to stimuli, often for time intervals extending over multiple cell cycles (Figure 1A, left). For example, mammalian oligodendrocyte precursors typically proliferate for ∼ 7 divisions before differentiating during neural development. The bacterium Bacillus subtilis can respond to sudden nutrient limitation by transforming into a dormant spore after ∼ 5 cell cycles. Timers can balance proliferation with differentiation to control the sizes of various cell populations. Some timers appear to operate in a largely cell-autonomous fashion, but the underlying genetic circuit mechanisms that enable this remain poorly understood. Protein dilution poses stringent challenges to timer circuits by continually diluting out timer components in proliferating cells (Figure 1A, right). Recent work suggests that pulsatile or oscillatory dynamics can facilitate timer functions [3,4]. Here, we show how polyphasic positive feedback - a pulsed architecture that breaks a feedback signal into temporally distinct phases - counteracts protein dilution to facilitate timer behavior.
Copyright © 2014 Elsevier Ltd. All rights reserved.

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Year:  2014        PMID: 25442853      PMCID: PMC4451454          DOI: 10.1016/j.cub.2014.08.030

Source DB:  PubMed          Journal:  Curr Biol        ISSN: 0960-9822            Impact factor:   10.834


  8 in total

1.  Robust circadian clocks from coupled protein-modification and transcription-translation cycles.

Authors:  David Zwicker; David K Lubensky; Pieter Rein ten Wolde
Journal:  Proc Natl Acad Sci U S A       Date:  2010-12-13       Impact factor: 11.205

2.  High- and low-threshold genes in the Spo0A regulon of Bacillus subtilis.

Authors:  Masaya Fujita; José Eduardo González-Pastor; Richard Losick
Journal:  J Bacteriol       Date:  2005-02       Impact factor: 3.490

3.  Triggering sporulation in Bacillus subtilis with artificial two-component systems reveals the importance of proper Spo0A activation dynamics.

Authors:  Monika Vishnoi; Jatin Narula; Seram Nganbiton Devi; Hoang-Anh Dao; Oleg A Igoshin; Masaya Fujita
Journal:  Mol Microbiol       Date:  2013-08-23       Impact factor: 3.501

4.  Nucleocytoplasmic shuttling of a GATA transcription factor functions as a development timer.

Authors:  Huaqing Cai; Mariko Katoh-Kurasawa; Tetsuya Muramoto; Balaji Santhanam; Yu Long; Lei Li; Masahiro Ueda; Pablo A Iglesias; Gad Shaulsky; Peter N Devreotes
Journal:  Science       Date:  2014-03-21       Impact factor: 47.728

Review 5.  Intracellular developmental timers.

Authors:  M Raff
Journal:  Cold Spring Harb Symp Quant Biol       Date:  2007

6.  Titration of four replication factors is essential for the Xenopus laevis midblastula transition.

Authors:  Clara Collart; George E Allen; Charles R Bradshaw; James C Smith; Philip Zegerman
Journal:  Science       Date:  2013-08-01       Impact factor: 47.728

Review 7.  Functional roles of pulsing in genetic circuits.

Authors:  Joe H Levine; Yihan Lin; Michael B Elowitz
Journal:  Science       Date:  2013-12-06       Impact factor: 47.728

8.  Pulsed feedback defers cellular differentiation.

Authors:  Joe H Levine; Michelle E Fontes; Jonathan Dworkin; Michael B Elowitz
Journal:  PLoS Biol       Date:  2012-01-31       Impact factor: 8.029

  8 in total
  6 in total

1.  Intrinsic regulation of FIC-domain AMP-transferases by oligomerization and automodification.

Authors:  Frédéric V Stanger; Björn M Burmann; Alexander Harms; Hugo Aragão; Adam Mazur; Timothy Sharpe; Christoph Dehio; Sebastian Hiller; Tilman Schirmer
Journal:  Proc Natl Acad Sci U S A       Date:  2016-01-19       Impact factor: 11.205

Review 2.  Temporal and evolutionary dynamics of two-component signaling pathways.

Authors:  Michael E Salazar; Michael T Laub
Journal:  Curr Opin Microbiol       Date:  2015-01-10       Impact factor: 7.934

3.  Scalable control of developmental timetables by epigenetic switching networks.

Authors:  Phuc Nguyen; Nicholas A Pease; Hao Yuan Kueh
Journal:  J R Soc Interface       Date:  2021-07-21       Impact factor: 4.293

4.  Identifying stochastic oscillations in single-cell live imaging time series using Gaussian processes.

Authors:  Nick E Phillips; Cerys Manning; Nancy Papalopulu; Magnus Rattray
Journal:  PLoS Comput Biol       Date:  2017-05-11       Impact factor: 4.475

Review 5.  What does time mean in development?

Authors:  Miki Ebisuya; James Briscoe
Journal:  Development       Date:  2018-06-26       Impact factor: 6.868

Review 6.  Rhythmicity and waves in the cortex of single cells.

Authors:  Yang Yang; Min Wu
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2018-05-26       Impact factor: 6.237

  6 in total

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