Literature DB >> 25437878

Rare codons capacitate Kras-driven de novo tumorigenesis.

Nicole L K Pershing, Benjamin L Lampson, Jason A Belsky, Erin Kaltenbrun, David M MacAlpine, Christopher M Counter.   

Abstract

The KRAS gene is commonly mutated in human cancers, rendering the encoded small GTPase constitutively active and oncogenic. This gene has the unusual feature of being enriched for rare codons, which limit protein expression. Here, to determine the effect of the rare codon bias of the KRAS gene on de novo tumorigenesis, we introduced synonymous mutations that converted rare codons into common codons in exon 3 of the Kras gene in mice. Compared with control animals, mice with at least 1 copy of this Kras(ex3op) allele had fewer tumors following carcinogen exposure, and this allele was mutated less often, with weaker oncogenic mutations in these tumors. This reduction in tumorigenesis was attributable to higher expression of the Kras(ex3op) allele, which induced growth arrest when oncogenic and exhibited tumor-suppressive activity when not mutated. Together, our data indicate that the inherent rare codon bias of KRAS plays an integral role in tumorigenesis.

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Year:  2014        PMID: 25437878      PMCID: PMC4382256          DOI: 10.1172/JCI77627

Source DB:  PubMed          Journal:  J Clin Invest        ISSN: 0021-9738            Impact factor:   14.808


  53 in total

1.  Codon usage tabulated from international DNA sequence databases: status for the year 2000.

Authors:  Y Nakamura; T Gojobori; T Ikemura
Journal:  Nucleic Acids Res       Date:  2000-01-01       Impact factor: 16.971

2.  Induction and apoptotic regression of lung adenocarcinomas by regulation of a K-Ras transgene in the presence and absence of tumor suppressor genes.

Authors:  G H Fisher; S L Wellen; D Klimstra; J M Lenczowski; J W Tichelaar; M J Lizak; J A Whitsett; A Koretsky; H E Varmus
Journal:  Genes Dev       Date:  2001-12-15       Impact factor: 11.361

3.  Analysis of lung tumor initiation and progression using conditional expression of oncogenic K-ras.

Authors:  E L Jackson; N Willis; K Mercer; R T Bronson; D Crowley; R Montoya; T Jacks; D A Tuveson
Journal:  Genes Dev       Date:  2001-12-15       Impact factor: 11.361

4.  Mutation-specific RAS oncogenicity explains NRAS codon 61 selection in melanoma.

Authors:  Christin E Burd; Wenjin Liu; Minh V Huynh; Meriam A Waqas; James E Gillahan; Kelly S Clark; Kailing Fu; Brit L Martin; William R Jeck; George P Souroullas; David B Darr; Daniel C Zedek; Michael J Miley; Bruce C Baguley; Sharon L Campbell; Norman E Sharpless
Journal:  Cancer Discov       Date:  2014-09-24       Impact factor: 39.397

5.  The codon Adaptation Index--a measure of directional synonymous codon usage bias, and its potential applications.

Authors:  P M Sharp; W H Li
Journal:  Nucleic Acids Res       Date:  1987-02-11       Impact factor: 16.971

6.  A cre-transgenic mouse strain for the ubiquitous deletion of loxP-flanked gene segments including deletion in germ cells.

Authors:  F Schwenk; U Baron; K Rajewsky
Journal:  Nucleic Acids Res       Date:  1995-12-25       Impact factor: 16.971

7.  Wildtype Kras2 can inhibit lung carcinogenesis in mice.

Authors:  Z Zhang; Y Wang; H G Vikis; L Johnson; G Liu; J Li; M W Anderson; R C Sills; H L Hong; T R Devereux; T Jacks; K L Guan; M You
Journal:  Nat Genet       Date:  2001-09       Impact factor: 38.330

8.  Loss of p16Ink4a with retention of p19Arf predisposes mice to tumorigenesis.

Authors:  N E Sharpless; N Bardeesy; K H Lee; D Carrasco; D H Castrillon; A J Aguirre; E A Wu; J W Horner; R A DePinho
Journal:  Nature       Date:  2001-09-06       Impact factor: 49.962

9.  Activated Kras and Ink4a/Arf deficiency cooperate to produce metastatic pancreatic ductal adenocarcinoma.

Authors:  Andrew J Aguirre; Nabeel Bardeesy; Manisha Sinha; Lyle Lopez; David A Tuveson; James Horner; Mark S Redston; Ronald A DePinho
Journal:  Genes Dev       Date:  2003-12-17       Impact factor: 11.361

Review 10.  The genetic basis of susceptibility to lung tumors in mice.

Authors:  A M Malkinson
Journal:  Toxicology       Date:  1989-03       Impact factor: 4.221

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  41 in total

Review 1.  The Code of Silence: Widespread Associations Between Synonymous Codon Biases and Gene Function.

Authors:  Fran Supek
Journal:  J Mol Evol       Date:  2015-11-04       Impact factor: 2.395

2.  Absolute Quantitation of GTPase Protein Abundance.

Authors:  Fiona E Hood; Yasmina M Sahraoui; Rosalind E Jenkins; Ian Prior
Journal:  Methods Mol Biol       Date:  2021

3.  Translation regulation in skin cancer from a tRNA point of view.

Authors:  Katerina Grafanaki; Dimitrios Anastasakis; George Kyriakopoulos; Ilias Skeparnias; Sophia Georgiou; Constantinos Stathopoulos
Journal:  Epigenomics       Date:  2018-12-19       Impact factor: 4.778

4.  CDKN2B Loss Promotes Progression from Benign Melanocytic Nevus to Melanoma.

Authors:  Andrew S McNeal; Kevin Liu; Vihang Nakhate; Christopher A Natale; Elizabeth K Duperret; Brian C Capell; Tzvete Dentchev; Shelley L Berger; Meenhard Herlyn; John T Seykora; Todd W Ridky
Journal:  Cancer Discov       Date:  2015-07-16       Impact factor: 39.397

Review 5.  RAS isoforms and mutations in cancer at a glance.

Authors:  G Aaron Hobbs; Channing J Der; Kent L Rossman
Journal:  J Cell Sci       Date:  2016-03-16       Impact factor: 5.285

Review 6.  KRAS: The Critical Driver and Therapeutic Target for Pancreatic Cancer.

Authors:  Andrew M Waters; Channing J Der
Journal:  Cold Spring Harb Perspect Med       Date:  2018-09-04       Impact factor: 6.915

7.  KRAS Oncoprotein Expression Is Regulated by a Self-Governing eIF5A-PEAK1 Feed-Forward Regulatory Loop.

Authors:  Ken Fujimura; Huawei Wang; Felicia Watson; Richard L Klemke
Journal:  Cancer Res       Date:  2018-01-10       Impact factor: 12.701

8.  Codon usage regulates human KRAS expression at both transcriptional and translational levels.

Authors:  Jingjing Fu; Yunkun Dang; Christopher Counter; Yi Liu
Journal:  J Biol Chem       Date:  2018-10-01       Impact factor: 5.157

9.  Codon usage biases co-evolve with transcription termination machinery to suppress premature cleavage and polyadenylation.

Authors:  Zhipeng Zhou; Yunkun Dang; Mian Zhou; Haiyan Yuan; Yi Liu
Journal:  Elife       Date:  2018-03-16       Impact factor: 8.140

10.  Mutation bias within oncogene families is related to proliferation-specific codon usage.

Authors:  Hannah Benisty; Marc Weber; Xavier Hernandez-Alias; Martin H Schaefer; Luis Serrano
Journal:  Proc Natl Acad Sci U S A       Date:  2020-11-16       Impact factor: 11.205

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