Literature DB >> 25435400

Nuclear receptor full-length architectures: confronting myth and illusion with high resolution.

Fraydoon Rastinejad1, Vincent Ollendorff2, Igor Polikarpov3.   

Abstract

The crystal structures of three nuclear receptor (NR) complexes have emerged to reveal their multidomain architectures on DNA. These pictures provide unprecedented views of interfacial couplings between the DNA-binding domains (DBDs) and ligand-binding domains (LBDs). The detailed pictures contrast with previous interpretations of low-resolution electron microscopy (EM) and small angle X-ray scattering (SAXS) data, which had suggested a common architecture with noninteracting DBDs and LBDs. Revisiting both historical and recent interpretations of NR architecture, we invoke new principles underlying higher-order quaternary organization and the allosteric transmission of signals between domains. We also discuss how NR architectures are being probed in living cells to understand dimerization and DNA-binding events in real time.
Copyright © 2014 Elsevier Ltd. All rights reserved.

Entities:  

Keywords:  BRET; SAXS; X-ray crystallography; allostery; electron microscopy; nuclear receptor; transcription factor

Mesh:

Substances:

Year:  2014        PMID: 25435400      PMCID: PMC4274238          DOI: 10.1016/j.tibs.2014.10.011

Source DB:  PubMed          Journal:  Trends Biochem Sci        ISSN: 0968-0004            Impact factor:   13.807


  58 in total

Review 1.  Nuclear receptor coregulators: cellular and molecular biology.

Authors:  N J McKenna; R B Lanz; B W O'Malley
Journal:  Endocr Rev       Date:  1999-06       Impact factor: 19.871

2.  A dynamic mechanism of nuclear receptor activation and its perturbation in a human disease.

Authors:  Bettina C Kallenberger; James D Love; V Krishna K Chatterjee; John W R Schwabe
Journal:  Nat Struct Biol       Date:  2003-02

3.  Structural basis for a molecular allosteric control mechanism of cofactor binding to nuclear receptors.

Authors:  Judit Osz; Yann Brélivet; Carole Peluso-Iltis; Vincent Cura; Sylvia Eiler; Marc Ruff; William Bourguet; Natacha Rochel; Dino Moras
Journal:  Proc Natl Acad Sci U S A       Date:  2012-02-21       Impact factor: 11.205

4.  Crystal structure of the RAR-gamma ligand-binding domain bound to all-trans retinoic acid.

Authors:  J P Renaud; N Rochel; M Ruff; V Vivat; P Chambon; H Gronemeyer; D Moras
Journal:  Nature       Date:  1995-12-14       Impact factor: 49.962

5.  A canonical structure for the ligand-binding domain of nuclear receptors.

Authors:  J M Wurtz; W Bourguet; J P Renaud; V Vivat; P Chambon; D Moras; H Gronemeyer
Journal:  Nat Struct Biol       Date:  1996-01

6.  The nuclear receptor corepressor (N-CoR) contains three isoleucine motifs (I/LXXII) that serve as receptor interaction domains (IDs).

Authors:  P Webb; C M Anderson; C Valentine; P Nguyen; A Marimuthu; B L West; J D Baxter; P J Kushner
Journal:  Mol Endocrinol       Date:  2000-12

7.  Magnesium is required for specific DNA binding of the CREB B-ZIP domain.

Authors:  Jonathan R Moll; Asha Acharya; Jozsef Gal; Alain A Mir; Charles Vinson; Jozset Gal
Journal:  Nucleic Acids Res       Date:  2002-03-01       Impact factor: 16.971

8.  Dynamics and ligand-induced solvent accessibility changes in human retinoid X receptor homodimer determined by hydrogen deuterium exchange and mass spectrometry.

Authors:  Xuguang Yan; David Broderick; Mark E Leid; Michael I Schimerlik; Max L Deinzer
Journal:  Biochemistry       Date:  2004-02-03       Impact factor: 3.162

9.  Structural basis for the deactivation of the estrogen-related receptor gamma by diethylstilbestrol or 4-hydroxytamoxifen and determinants of selectivity.

Authors:  Holger Greschik; Ralf Flaig; Jean-Paul Renaud; Dino Moras
Journal:  J Biol Chem       Date:  2004-05-24       Impact factor: 5.157

10.  Low-resolution molecular models reveal the oligomeric state of the PPAR and the conformational organization of its domains in solution.

Authors:  Amanda Bernardes; Fernanda A H Batista; Mario de Oliveira Neto; Ana Carolina M Figueira; Paul Webb; Daniel Saidemberg; Mario S Palma; Igor Polikarpov
Journal:  PLoS One       Date:  2012-02-21       Impact factor: 3.240

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  21 in total

Review 1.  Minireview: nuclear receptor coregulators of the p160 family: insights into inflammation and metabolism.

Authors:  David A Rollins; Maddalena Coppo; Inez Rogatsky
Journal:  Mol Endocrinol       Date:  2015-02-03

Review 2.  Visualizing the Architectures and Interactions of Nuclear Receptors.

Authors:  Sepideh Khorasanizadeh; Fraydoon Rastinejad
Journal:  Endocrinology       Date:  2016-10-05       Impact factor: 4.736

3.  A phosphorylation-deficient mutant of retinoid X receptor α at Thr 167 alters fasting response and energy metabolism in mice.

Authors:  Tatsuya Sueyoshi; Tsutomu Sakuma; Sawako Shindo; Muluneh Fashe; Tomohiko Kanayama; Manas Ray; Rick Moore; Masahiko Negishi
Journal:  Lab Invest       Date:  2019-05-31       Impact factor: 5.662

Review 4.  A review of the molecular design and biological activities of RXR agonists.

Authors:  Nathalia Rodrigues de Almeida; Martin Conda-Sheridan
Journal:  Med Res Rev       Date:  2019-04-03       Impact factor: 12.944

5.  Structural studies unravel the active conformation of apo RORγt nuclear receptor and a common inverse agonism of two diverse classes of RORγt inhibitors.

Authors:  Xiang Li; Marie Anderson; Delphine Collin; Ingo Muegge; John Wan; Debra Brennan; Stanley Kugler; Donna Terenzio; Charles Kennedy; Siqi Lin; Mark E Labadia; Brian Cook; Robert Hughes; Neil A Farrow
Journal:  J Biol Chem       Date:  2017-05-25       Impact factor: 5.157

6.  The Phosphorylated Estrogen Receptor α (ER) Cistrome Identifies a Subset of Active Enhancers Enriched for Direct ER-DNA Binding and the Transcription Factor GRHL2.

Authors:  Kyle T Helzer; Mary Szatkowski Ozers; Mark B Meyer; Nancy A Benkusky; Natalia Solodin; Rebecca M Reese; Christopher L Warren; J Wesley Pike; Elaine T Alarid
Journal:  Mol Cell Biol       Date:  2019-01-16       Impact factor: 4.272

7.  Epigenome-wide effects of vitamin D and their impact on the transcriptome of human monocytes involve CTCF.

Authors:  Sabine Seuter; Antonio Neme; Carsten Carlberg
Journal:  Nucleic Acids Res       Date:  2015-12-28       Impact factor: 16.971

8.  The conformational dynamics of H2-H3n and S2-H6 in gating ligand entry into the buried binding cavity of vitamin D receptor.

Authors:  Wei-Ven Tee; Adiratna Mat Ripen; Saharuddin Bin Mohamad
Journal:  Sci Rep       Date:  2016-10-27       Impact factor: 4.379

9.  Structural mechanism for signal transduction in RXR nuclear receptor heterodimers.

Authors:  Douglas J Kojetin; Edna Matta-Camacho; Travis S Hughes; Sathish Srinivasan; Jerome C Nwachukwu; Valerie Cavett; Jason Nowak; Michael J Chalmers; David P Marciano; Theodore M Kamenecka; Andrew I Shulman; Mark Rance; Patrick R Griffin; John B Bruning; Kendall W Nettles
Journal:  Nat Commun       Date:  2015-08-20       Impact factor: 14.919

10.  Allosteric Pathways in the PPARγ-RXRα nuclear receptor complex.

Authors:  Clarisse G Ricci; Rodrigo L Silveira; Ivan Rivalta; Victor S Batista; Munir S Skaf
Journal:  Sci Rep       Date:  2016-01-29       Impact factor: 4.379

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