| Literature DB >> 25431538 |
Abstract
It is often useful to rerun a command line R script with some slight change in the parameters used to run it - a new set of parameters for a simulation, a different dataset to process, etc. The R package batch provides a means to pass in multiple command line options, including vectors of values in the usual R format, easily into R. The same script can be setup to run things in parallel via different command line arguments. The R package batch also provides a means to simplify this parallel batching by allowing one to use R and an R-like syntax for arguments to spread a script across a cluster or local multicore/multiprocessor computer, with automated syntax for several popular cluster types. Finally it provides a means to aggregate the results together of multiple processes run on a cluster.Entities:
Keywords: R; batch; cluster; command line arguments; parallel
Year: 2011 PMID: 25431538 PMCID: PMC4243301 DOI: 10.18637/jss.v039.c01
Source DB: PubMed Journal: J Stat Softw ISSN: 1548-7660 Impact factor: 6.440