Literature DB >> 25431186

Quantile regression model for a diverse set of chemicals: application to acute toxicity for green algae.

Jonathan Villain1, Sylvain Lozano, Marie-Pierre Halm-Lemeille, Gilles Durrieu, Ronan Bureau.   

Abstract

The potential of quantile regression (QR) and quantile support vector machine regression (QSVMR) was analyzed for the definitions of quantitative structure-activity relationship (QSAR) models associated with a diverse set of chemicals toward a particular endpoint. This study focused on a specific sensitive endpoint (acute toxicity to algae) for which even a narcosis QSAR model is not actually clear. An initial dataset including more than 401 ecotoxicological data for one species of algae (Selenastrum capricornutum) was defined. This set corresponds to a large sample of chemicals ranging from classical organic chemicals to pesticides. From this original data set, the selection of the different subsets was made in terms of the notion of toxic ratio (TR), a parameter based on the ratio between predicted and experimental values. The robustness of QR and QSVMR to outliers was clearly observed, thus demonstrating that this approach represents a major interest for QSAR associated with a diverse set of chemicals. We focused particularly on descriptors related to molecular surface properties.

Entities:  

Mesh:

Substances:

Year:  2014        PMID: 25431186     DOI: 10.1007/s00894-014-2508-x

Source DB:  PubMed          Journal:  J Mol Model        ISSN: 0948-5023            Impact factor:   1.810


  23 in total

1.  Prediction of the fish acute toxicity from heterogeneous data coming from notification files.

Authors:  J C Faucon; R Bureau; J Faisant; F Briens; S Rault
Journal:  Chemosphere       Date:  1999-06       Impact factor: 7.086

2.  Estimation of aqueous solubility of chemical compounds using E-state indices.

Authors:  I V Tetko; V Y Tanchuk; T N Kasheva; A E Villa
Journal:  J Chem Inf Comput Sci       Date:  2001 Nov-Dec

3.  Practical selection of SVM parameters and noise estimation for SVM regression.

Authors:  Vladimir Cherkassky; Yunqian Ma
Journal:  Neural Netw       Date:  2004-01

4.  New molecular descriptors based on local properties at the molecular surface and a boiling-point model derived from them.

Authors:  Bernd Ehresmann; Marcel J de Groot; Alexander Alex; Timothy Clark
Journal:  J Chem Inf Comput Sci       Date:  2004 Mar-Apr

5.  Solid phase microextraction as a tool to determine membrane/water partition coefficients and bioavailable concentrations in in vitro systems.

Authors:  W H Vaes; E U Ramos; C Hamwijk; I van Holsteijn; B J Blaauboer; W Seinen; H J Verhaar; J L Hermens
Journal:  Chem Res Toxicol       Date:  1997-10       Impact factor: 3.739

Review 6.  Application of quantile regression to recent genetic and -omic studies.

Authors:  Laurent Briollais; Gilles Durrieu
Journal:  Hum Genet       Date:  2014-04-26       Impact factor: 4.132

7.  Atom/fragment contribution method for estimating octanol-water partition coefficients.

Authors:  W M Meylan; P H Howard
Journal:  J Pharm Sci       Date:  1995-01       Impact factor: 3.534

8.  Application of the narcosis target lipid model to algal toxicity and deriving predicted-no-effect concentrations.

Authors:  Joy A McGrath; Thomas F Parkerton; Dominic M Di Toro
Journal:  Environ Toxicol Chem       Date:  2004-10       Impact factor: 3.742

9.  Support Vector Machine (SVM) as Alternative Tool to Assign Acute Aquatic Toxicity Warning Labels to Chemicals.

Authors:  Lisa Michielan; Luca Pireddu; Matteo Floris; Stefano Moro
Journal:  Mol Inform       Date:  2010-01-12       Impact factor: 3.353

Review 10.  Toxicity of thiols and disulphides: involvement of free-radical species.

Authors:  R Munday
Journal:  Free Radic Biol Med       Date:  1989       Impact factor: 7.376

View more
  2 in total

1.  New Models to Predict the Acute and Chronic Toxicities of Representative Species of the Main Trophic Levels of Aquatic Environments.

Authors:  Cosimo Toma; Claudia I Cappelli; Alberto Manganaro; Anna Lombardo; Jürgen Arning; Emilio Benfenati
Journal:  Molecules       Date:  2021-11-19       Impact factor: 4.411

2.  Defining the Human-Biota Thresholds of Toxicological Concern for Organic Chemicals in Freshwater: The Proposed Strategy of the LIFE VERMEER Project Using VEGA Tools.

Authors:  Diego Baderna; Roberta Faoro; Gianluca Selvestrel; Adrien Troise; Davide Luciani; Sandrine Andres; Emilio Benfenati
Journal:  Molecules       Date:  2021-03-30       Impact factor: 4.411

  2 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.