Literature DB >> 25430788

Improving the Q2MM method for transition state force field modeling.

Elaine Limé1, Per-Ola Norrby.   

Abstract

The Quantum-to-molecular mechanics method (Q2MM) for converting quantum mechanical transition states (TSs) to molecular mechanical minima has been modified to allow a fit to the "natural" reaction mode eigenvalue. The resulting force field gives an improved representation of the energy curvature at the TS, but can potentially give false responses to steric interactions. Ways to address this problem while staying close to the "natural" TS force field are discussed.
© 2014 Wiley Periodicals, Inc.

Keywords:  molecular mechanics; normal modes; parameterization; quantum-to-molecular mechanics; transition state force field

Mesh:

Year:  2014        PMID: 25430788     DOI: 10.1002/jcc.23797

Source DB:  PubMed          Journal:  J Comput Chem        ISSN: 0192-8651            Impact factor:   3.376


  4 in total

1.  Application of Q2MM to predictions in stereoselective synthesis.

Authors:  Anthony R Rosales; Taylor R Quinn; Jessica Wahlers; Anna Tomberg; Xin Zhang; Paul Helquist; Olaf Wiest; Per-Ola Norrby
Journal:  Chem Commun (Camb)       Date:  2018-07-24       Impact factor: 6.222

2.  Anomeric Effects in Sulfamides.

Authors:  Eric Hansen; Elaine Limé; Per-Ola Norrby; Olaf Wiest
Journal:  J Phys Chem A       Date:  2016-05-10       Impact factor: 2.781

3.  Prediction of Stereochemistry using Q2MM.

Authors:  Eric Hansen; Anthony R Rosales; Brandon Tutkowski; Per-Ola Norrby; Olaf Wiest
Journal:  Acc Chem Res       Date:  2016-04-11       Impact factor: 22.384

4.  Automated fitting of transition state force fields for biomolecular simulations.

Authors:  Taylor R Quinn; Himani N Patel; Kevin H Koh; Brandon E Haines; Per-Ola Norrby; Paul Helquist; Olaf Wiest
Journal:  PLoS One       Date:  2022-03-10       Impact factor: 3.240

  4 in total

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