Literature DB >> 25429930

On the time scale associated with Monte Carlo simulations.

Kristof M Bal1, Erik C Neyts1.   

Abstract

Uniform-acceptance force-bias Monte Carlo (fbMC) methods have been shown to be a powerful technique to access longer timescales in atomistic simulations allowing, for example, phase transitions and growth. Recently, a new fbMC method, the time-stamped force-bias Monte Carlo (tfMC) method, was derived with inclusion of an estimated effective timescale; this timescale, however, does not seem able to explain some of the successes the method. In this contribution, we therefore explicitly quantify the effective timescale tfMC is able to access for a variety of systems, namely a simple single-particle, one-dimensional model system, the Lennard-Jones liquid, an adatom on the Cu(100) surface, a silicon crystal with point defects and a highly defected graphene sheet, in order to gain new insights into the mechanisms by which tfMC operates. It is found that considerable boosts, up to three orders of magnitude compared to molecular dynamics, can be achieved for solid state systems by lowering of the apparent activation barrier of occurring processes, while not requiring any system-specific input or modifications of the method. We furthermore address the pitfalls of using the method as a replacement or complement of molecular dynamics simulations, its ability to explicitly describe correct dynamics and reaction mechanisms, and the association of timescales to MC simulations in general.

Entities:  

Year:  2014        PMID: 25429930     DOI: 10.1063/1.4902136

Source DB:  PubMed          Journal:  J Chem Phys        ISSN: 0021-9606            Impact factor:   3.488


  4 in total

1.  Atomic scale simulation of carbon nanotube nucleation from hydrocarbon precursors.

Authors:  Umedjon Khalilov; Annemie Bogaerts; Erik C Neyts
Journal:  Nat Commun       Date:  2015-12-22       Impact factor: 14.919

2.  Direct observation of realistic-temperature fuel combustion mechanisms in atomistic simulations.

Authors:  Kristof M Bal; Erik C Neyts
Journal:  Chem Sci       Date:  2016-05-05       Impact factor: 9.825

3.  Atomistic simulations of graphite etching at realistic time scales.

Authors:  D U B Aussems; K M Bal; T W Morgan; M C M van de Sanden; E C Neyts
Journal:  Chem Sci       Date:  2017-08-24       Impact factor: 9.825

4.  Spatial organization of chromosomes leads to heterogeneous chromatin motion and drives the liquid- or gel-like dynamical behavior of chromatin.

Authors:  Hossein Salari; Marco Di Stefano; Daniel Jost
Journal:  Genome Res       Date:  2021-12-28       Impact factor: 9.438

  4 in total

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