Literature DB >> 25429368

Extraction and Quantification of Cyclic Di-GMP from P. aeruginosa.

Ankita Basu Roy1, Olga E Petrova1, Karin Sauer1.   

Abstract

Cyclic di-GMP (c-di-GMP) has emerged as an important intracellular signaling molecule, controlling the transitions between planktonic (free-living) and sessile lifestyles, biofilm formation, and virulence in a wide variety of microorganisms. The following protocol describes the extraction and quantification of c-di-GMP from Pseudomonas aeruginosa samples. We have made every effort to keep the protocol as general as possible to enable the procedure to be applicable for the analysis of c-di-GMP levels in various bacterial species. However, some modifications may be required for the analysis of c-di-GMP levels in other bacterial species.

Entities:  

Year:  2013        PMID: 25429368      PMCID: PMC4241849          DOI: 10.21769/bioprotoc.828

Source DB:  PubMed          Journal:  Bio Protoc        ISSN: 2331-8325


  5 in total

1.  BdlA, a chemotaxis regulator essential for biofilm dispersion in Pseudomonas aeruginosa.

Authors:  Ryan Morgan; Steven Kohn; Sung-Hei Hwang; Daniel J Hassett; Karin Sauer
Journal:  J Bacteriol       Date:  2006-11       Impact factor: 3.490

2.  Microcolony formation by the opportunistic pathogen Pseudomonas aeruginosa requires pyruvate and pyruvate fermentation.

Authors:  Olga E Petrova; Jill R Schurr; Michael J Schurr; Karin Sauer
Journal:  Mol Microbiol       Date:  2012-09-20       Impact factor: 3.501

3.  The phosphodiesterase DipA (PA5017) is essential for Pseudomonas aeruginosa biofilm dispersion.

Authors:  Ankita Basu Roy; Olga E Petrova; Karin Sauer
Journal:  J Bacteriol       Date:  2012-04-06       Impact factor: 3.490

4.  GGDEF and EAL domains inversely regulate cyclic di-GMP levels and transition from sessility to motility.

Authors:  Roger Simm; Michael Morr; Abdul Kader; Manfred Nimtz; Ute Römling
Journal:  Mol Microbiol       Date:  2004-08       Impact factor: 3.501

5.  The novel cyclic dinucleotide 3'-5' cyclic diguanylic acid binds to p21ras and enhances DNA synthesis but not cell replication in the Molt 4 cell line.

Authors:  D Amikam; O Steinberger; T Shkolnik; Z Ben-Ishai
Journal:  Biochem J       Date:  1995-11-01       Impact factor: 3.857

  5 in total
  16 in total

1.  Elevated levels of the second messenger c-di-GMP contribute to antimicrobial resistance of Pseudomonas aeruginosa.

Authors:  Kajal Gupta; Julie Liao; Olga E Petrova; K E Cherny; Karin Sauer
Journal:  Mol Microbiol       Date:  2014-04-09       Impact factor: 3.501

2.  Colony-morphology screening uncovers a role for the Pseudomonas aeruginosa nitrogen-related phosphotransferase system in biofilm formation.

Authors:  Matthew T Cabeen; Sara A Leiman; Richard Losick
Journal:  Mol Microbiol       Date:  2015-11-27       Impact factor: 3.501

3.  BrlR from Pseudomonas aeruginosa is a c-di-GMP-responsive transcription factor.

Authors:  Jacob R Chambers; Julie Liao; Michael J Schurr; Karin Sauer
Journal:  Mol Microbiol       Date:  2014-03-06       Impact factor: 3.501

4.  Regulation of flagellar motor switching by c-di-GMP phosphodiesterases in Pseudomonas aeruginosa.

Authors:  Lingyi Xin; Yukai Zeng; Shuo Sheng; Rachel Andrea Chea; Qiong Liu; Hoi Yeung Li; Liang Yang; Linghui Xu; Keng-Hwee Chiam; Zhao-Xun Liang
Journal:  J Biol Chem       Date:  2019-07-26       Impact factor: 5.157

5.  Biological functions of nirS in Pseudomonas aeruginosa ATCC 9027 under aerobic conditions.

Authors:  Gang Zhou; Hong Peng; Ying-Si Wang; Cai-Ling Li; Peng-Fei Shen; Xiao-Mo Huang; Xiao-Bao Xie; Qing-Shan Shi
Journal:  J Ind Microbiol Biotechnol       Date:  2019-09-11       Impact factor: 3.346

6.  Genetically Encoded Ratiometric RNA-Based Sensors for Quantitative Imaging of Small Molecules in Living Cells.

Authors:  Rigumula Wu; Aruni P K K Karunanayake Mudiyanselage; Fatemeh Shafiei; Bin Zhao; Yousef Bagheri; Qikun Yu; Kathleen McAuliffe; Kewei Ren; Mingxu You
Journal:  Angew Chem Int Ed Engl       Date:  2019-10-24       Impact factor: 15.336

7.  A bipartite periplasmic receptor-diguanylate cyclase pair (XAC2383-XAC2382) in the bacterium Xanthomonas citri.

Authors:  Raphael D Teixeira; Cristiane R Guzzo; Santiago Justo Arévalo; Maxuel O Andrade; Josielle Abrahão; Robson F de Souza; Chuck S Farah
Journal:  J Biol Chem       Date:  2018-05-04       Impact factor: 5.157

8.  Diguanylate cyclase NicD-based signalling mechanism of nutrient-induced dispersion by Pseudomonas aeruginosa.

Authors:  Ankita Basu Roy; Karin Sauer
Journal:  Mol Microbiol       Date:  2014-10-12       Impact factor: 3.501

9.  Divide and conquer: the Pseudomonas aeruginosa two-component hybrid SagS enables biofilm formation and recalcitrance of biofilm cells to antimicrobial agents via distinct regulatory circuits.

Authors:  Olga E Petrova; Kajal Gupta; Julie Liao; James S Goodwine; Karin Sauer
Journal:  Environ Microbiol       Date:  2017-04-03       Impact factor: 5.491

10.  The PA3177 Gene Encodes an Active Diguanylate Cyclase That Contributes to Biofilm Antimicrobial Tolerance but Not Biofilm Formation by Pseudomonas aeruginosa.

Authors:  Bandita Poudyal; Karin Sauer
Journal:  Antimicrob Agents Chemother       Date:  2018-09-24       Impact factor: 5.191

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