Literature DB >> 25428344

Probabilistic networks of blood metabolites in healthy subjects as indicators of latent cardiovascular risk.

Edoardo Saccenti1, Maria Suarez-Diez, Claudio Luchinat, Claudio Santucci, Leonardo Tenori.   

Abstract

The complex nature of the mechanisms behind cardiovascular diseases prevents the detection of latent early risk conditions. Network representations are ideally suited to investigate the complex interconnections between the individual components of a biological system that underlies complex diseases. Here, we investigate the patterns of correlations of an array of 29 metabolites identified and quantified in the plasma of 864 healthy blood donors and use a systems biology approach to define metabolite probabilistic networks specific for low and high latent cardiovascular risk. We adapted methods based on the likelihood of correlation and methods from information theory and combined them with resampling techniques. Our results show that plasma metabolite networks can be defined that associate with latent cardiovascular disease risk. The analysis of the networks supports our previous finding of a possible association between cardiovascular risk and impaired mitochondrial activity and highlights post-translational modifications (glycosilation and oxidation) of lipoproteins as a possible target-mechanism for early detection of latent cardiovascular risk.

Entities:  

Keywords:  amino acids; arginine; blood low molecular weight metabolite; cardiovascular risk; correlation networks; metabolomics; mutual information; post-translational modifications; systems biology

Mesh:

Year:  2014        PMID: 25428344     DOI: 10.1021/pr501075r

Source DB:  PubMed          Journal:  J Proteome Res        ISSN: 1535-3893            Impact factor:   4.466


  18 in total

1.  Analysis of host-pathogen gene association networks reveals patient-specific response to streptococcal and polymicrobial necrotising soft tissue infections.

Authors:  Sanjeevan Jahagirdar; Lorna Morris; Nirupama Benis; Oddvar Oppegaard; Mattias Svenson; Ole Hyldegaard; Steinar Skrede; Anna Norrby-Teglund; Vitor A P Martins Dos Santos; Edoardo Saccenti
Journal:  BMC Med       Date:  2022-05-04       Impact factor: 11.150

2.  A Comparative Metabolomics Approach Reveals Early Biomarkers for Metabolic Response to Acute Myocardial Infarction.

Authors:  Sara E Ali; Mohamed A Farag; Paul Holvoet; Rasha S Hanafi; Mohamed Z Gad
Journal:  Sci Rep       Date:  2016-11-08       Impact factor: 4.379

3.  An Untargeted Metabolomics Approach to Characterize Short-Term and Long-Term Metabolic Changes after Bariatric Surgery.

Authors:  Sophie H Narath; Selma I Mautner; Eva Svehlikova; Bernd Schultes; Thomas R Pieber; Frank M Sinner; Edgar Gander; Gunnar Libiseller; Michael G Schimek; Harald Sourij; Christoph Magnes
Journal:  PLoS One       Date:  2016-09-01       Impact factor: 3.240

4.  Use of Microarray Datasets to generate Caco-2-dedicated Networks and to identify Reporter Genes of Specific Pathway Activity.

Authors:  Prashanna Balaji Venkatasubramanian; Gamze Toydemir; Nicole de Wit; Edoardo Saccenti; Vitor A P Martins Dos Santos; Peter van Baarlen; Jerry M Wells; Maria Suarez-Diez; Jurriaan J Mes
Journal:  Sci Rep       Date:  2017-07-28       Impact factor: 4.379

5.  Multi-Level Integration of Environmentally Perturbed Internal Phenotypes Reveals Key Points of Connectivity between Them.

Authors:  Nirupama Benis; Soumya K Kar; Vitor A P Martins Dos Santos; Mari A Smits; Dirkjan Schokker; Maria Suarez-Diez
Journal:  Front Physiol       Date:  2017-06-12       Impact factor: 4.566

Review 6.  From correlation to causation: analysis of metabolomics data using systems biology approaches.

Authors:  Antonio Rosato; Leonardo Tenori; Marta Cascante; Pedro Ramon De Atauri Carulla; Vitor A P Martins Dos Santos; Edoardo Saccenti
Journal:  Metabolomics       Date:  2018-02-27       Impact factor: 4.290

7.  SyNDI: synchronous network data integration framework.

Authors:  Erno Lindfors; Jesse C J van Dam; Carolyn Ming Chi Lam; Niels A Zondervan; Vitor A P Martins Dos Santos; Maria Suarez-Diez
Journal:  BMC Bioinformatics       Date:  2018-11-06       Impact factor: 3.169

8.  Exploration of Blood Lipoprotein and Lipid Fraction Profiles in Healthy Subjects through Integrated Univariate, Multivariate, and Network Analysis Reveals Association of Lipase Activity and Cholesterol Esterification with Sex and Age.

Authors:  Yasmijn Balder; Alessia Vignoli; Leonardo Tenori; Claudio Luchinat; Edoardo Saccenti
Journal:  Metabolites       Date:  2021-05-18

9.  Plasma and Serum Metabolite Association Networks: Comparability within and between Studies Using NMR and MS Profiling.

Authors:  Maria Suarez-Diez; Jonathan Adam; Jerzy Adamski; Styliani A Chasapi; Claudio Luchinat; Annette Peters; Cornelia Prehn; Claudio Santucci; Alexandros Spyridonidis; Georgios A Spyroulias; Leonardo Tenori; Rui Wang-Sattler; Edoardo Saccenti
Journal:  J Proteome Res       Date:  2017-05-26       Impact factor: 4.466

10.  Network integration of multi-tumour omics data suggests novel targeting strategies.

Authors:  Ítalo Faria do Valle; Giulia Menichetti; Giorgia Simonetti; Samantha Bruno; Isabella Zironi; Danielle Fernandes Durso; José C M Mombach; Giovanni Martinelli; Gastone Castellani; Daniel Remondini
Journal:  Nat Commun       Date:  2018-10-30       Impact factor: 14.919

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